Input parameters:

  Query = ENSMUSP00000037340 (Len=657)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000037340, Len=657):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHSGTSEVTGADTAGPDPQLAVTMGFTGFGKKARTFDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRKQIEDM 80  
WD40-rpts      (____________________________________WD 1___________________________________)   

Query       81 EPAPSSSSAARERSQSSCRDTSSSDSESDDSSDSSDDELIGPPLPPKMVGESVTTVDEGTLGPLPPPLCEEGEDDDDDEL 160 
WD40-rpts          (_________________WD 2________________)             (________________WD 3___

Query      161 DDEGEEDNPVQRIPDSHEITLRHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQY 240 
WD40-rpts      _____________)_________________WD 4_________________)(_____________________WD 5_

Query      241 SNTGDMILVVSGSSQAKVIDRDGFEVMECIKGDQYIVDMANTKGHTAMLHTGSWHPKIKGEFMTCSNDATVRLWEVENPK 320 
WD40-rpts      ___________________)           (___________________WD 6___________________)     

Query      321 KQKSVFKPRTMQGKKVIPTTCTYSRDGNLVAAACQNGSIQIWDRNLTVHPKFHYKQAHDPGTDTSCVAFSYDGNVLASRG 400 
WD40-rpts      (___________________WD 7__________________)     (__________________WD 8_________

Query      401 GDDTLKLWDVRQFNKPLFSASDLPTLFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLVFLERRTFQRVYEIHITDASVVRC 480 
WD40-rpts      ________)(_______________________WD 9______________________)   (________________

Query      481 LWHPKLNQIMVGTGNGLAKVYYDPNKSQRGAKLCVVKTQRKAKQAETLTQDYIITPHALPMFREPRQRSTRKQLEKDRLD 560 
WD40-rpts      _WD10________________)       (_________________WD11________________)            

Query      561 PLKSHKPEPPVAGPGRGGRVGTHGGTLSSYIVKNIALDKTDDSNPREAILRHAKAAEDNPYWVSPAYSKTQPKTMFAQVE 640 
WD40-rpts                                                                                      

Query      641 SDDEESKNEPEWKKRKI 657 
WD40-rpts                       

11 WD40-repeats found in QUERY=ENSMUSP00000037340 (Len=657):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-77       4.22  288.85  0.00795       15.0%     15.40
  WD 2:  Seg  2    85-123      4.85  315.01  0.00354       15.0%      1.00
  WD 3:  Seg  4   137-174      5.82  355.07  0.00102       12.5%     18.40
  WD 4:  Seg  6   174-213     10.37  542.98  3.0e-06       35.0%     53.45
  WD 5:  Seg 10   214-260      6.46  381.33  0.00045       17.5%     50.43
  WD 6:  Seg 14   272-315      7.28  415.44  0.00016       25.0%     48.19
  WD 7:  Seg 18   321-363      8.77  476.94  2.3e-05       27.5%     42.49
  WD 8:  Seg 21   369-409      7.70  432.66  9.2e-05       35.0%     54.65
  WD 9:  Seg 25   410-460      5.41  338.26  0.00172       22.5%     49.00
  WD10:  Seg 29   464-502      7.48  423.82  0.00012       15.0%     56.80
  WD11:  Seg 32   510-548      3.37  253.74  0.02345        7.5%     13.17

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-77     --------------------MEHSGTSEV--TGADTAGPDPQ-LAVTMGFTGF------GKKARTFDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRKQI
   WD 2   85-123    -S-------S-----SS---AARERSQSS--CRDTSSSDSES-DDSS---DSS------DDELIGPP---------------------------------------
   WD 3  137-174    DE-------G-----TL-----GPLPPPL--CEEGEDDDDDE-LDDE---GEE------DNPVQRIP---------------------------------------
   WD 4  174-213    PD-------S-----HE---ITLRHGTKT--VSALGLDPSGA-RLVT---GGY------DYDVKFWD---------------------------------------
   WD 5  214-260    FAGMDASFKA-----FR---SLQPCECHQ--IKSLQYSNTGD-MILV---VSG------SSQAKVID---------------------------------------
   WD 6  272-315    GD-------Q--YIVDM---ANTKGHTAM--LHTGSWHPKIKGEFMT---CSN------DATVRLWE---------------------------------------
   WD 7  321-363    KQ-------K-----SVFKPRTMQGKKVI--PTTCTYSRDGN-LVAA---ACQ------NGSIQIWD---------------------------------------
   WD 8  369-409    -H-------P-----KF---HYKQAHDPGTDTSCVAFSYDGN-VLAS---RGG------DDTLKLWD---------------------------------------
   WD 9  410-460    VR-------QFNKPLFS---ASDLPTLFP--MTDCCFSPDDK-LIVT---GTSVQRGCGSGKLVFLE---------------------------------------
   WD10  464-502    -F-------Q-----RV---YEIHITDAS--VVRCLWHPKLN-QIMV---GTG------NGLAKVYY---------------------------------------
   WD11  510-548    -G-------A-----KL---CVVKTQRKA--KQAETLTQDYI-ITPH---ALP------MFREPRQR---------------------------------------

   WD40 Template    TG-------E-----CL---RTLSGHTSG--VTSVSFSPDGK-RLVS---GSE------DGTIKVWD---------------------------------------