Input parameters:

  Query = ENSMUSP00000036682 (Len=567)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000036682, Len=567):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKG 80  
WD40-rpts                  (_________________WD 1_________________)  (_____________WD 2________

Query       81 VRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPG 160 
WD40-rpts      _____)   (__________________WD 3__________________)                             

Query      161 SDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDG 240 
WD40-rpts                 (_______________WD 4______________)(_________________WD 5____________

Query      241 FLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEES 320 
WD40-rpts      _____)   (_________________WD 6________________)   (___________________WD 7_____

Query      321 DPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHAN 400 
WD40-rpts      _____________)     (__________________WD 8_________________)            (_______

Query      401 VMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNH 480 
WD40-rpts      _________WD 9_______________)                   (___________________________WD10

Query      481 SMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPG 560 
WD40-rpts      ___________________________)            (________________WD11_______________)   

Query      561 KVSKFQP 567 
WD40-rpts             

11 WD40-repeats found in QUERY=ENSMUSP00000036682 (Len=567):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       5.57  344.61  0.00141       10.0%     16.57
  WD 2:  Seg  4    55-86       4.17  286.98  0.00842       22.5%     42.24
  WD 3:  Seg  7    90-131      6.26  373.19  0.00058       15.0%     54.87
  WD 4:  Seg 14   172-206      4.66  307.07  0.00452       17.5%     34.89
  WD 5:  Seg 18   207-246      9.38  502.24  1.1e-05       27.5%     53.72
  WD 6:  Seg 22   250-288      9.77  518.10  6.5e-06       35.0%     54.97
  WD 7:  Seg 26   292-334      6.81  395.76  0.00029       22.5%     42.71
  WD 8:  Seg 30   340-380      6.73  392.60  0.00032       20.0%     50.88
  WD 9:  Seg 34   393-429      4.85  314.80  0.00356        5.0%     23.75
  WD10:  Seg 38   449-508      5.11  325.87  0.00252       20.0%     25.36
  WD11:  Seg 40   521-557      5.31  334.14  0.00195       22.5%     46.55

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     IKTHF--------------------TTREGLYR---LLPHSEYSR--PNR--VPFNSQ----GSNPVRVSF
   WD 2   55-86     ---------------------------LNDQTG---NGNRLCFS---VGR--ELYVYI----YKGVRKAAD
   WD 3   90-131    -PIDK--------------------RIYKGTQPTCHDFNHLTATA--ESV--SLLVGF----SAGQVQLID
   WD 4  172-206    -GNMY--------------------SYNVEHTY---GT----TAP--HYQ--LLKQGE----SFAVHNCKS
   WD 5  207-246    KSTRD--------------------LKWTVGEG---ALNEFAFSP--DGK--FLACVS----QDGFLRVFN
   WD 6  250-288    -AELH--------------------GTMKSYFG---GLLCLCWSP--DGK--YIVTGG----EDDLVTVWS
   WD 7  292-334    -CRVI--------------------ARGRGHKS---WVSVVAFDP--YTT--SVEESDPMEFSDSDKNFQD
   WD 8  340-380    -RDRA--------------------NSTQSRLS---KQNSTDSRP--VSVTYRFGSVG----QDTQLCLWD
   WD 9  393-429    -------------------------SRARAHAN---VMNATGLPAGSNGS--AVTTPG----NSVPPPLPR
   WD10  449-508    DGAITSGVSKFALLSLHDRKERHHEKDRKRNHS---MGHISSKSS--DKL--NLVNKA----KTDPAKTLG
   WD11  521-557    -LEPL--------------------ICKKIAHE---RLTVLVFLE--DC----IVTAC----QEGFICTWA

   WD40 Template    TGECL--------------------RTLSGHTS---GVTSVSFSP--DGK--RLVSGS----EDGTIKVWD