Input parameters:

  Query = ENSMUSP00000036631 (Len=1250)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000036631, Len=1250):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAIKTWVFSFLVLEVTTVLGRQTMLAQSVRRVQPVKRTPKTLAKPADSQESPGEWTTWFNIDHPGGQGDYERLDAIRFY 80  
WD40-rpts                                                                                      

Query       81 YGERVCARPLRLEARTTDWMPAGSTGQVVHGSPREGFWCLNREQRPGQNCSNYTVRFLCPPGSLRGDAEHIWSSWSPWSK 160 
WD40-rpts                                                                                      

Query      161 CSAACGHTGVQTRTRTCLAQTVSLCSEATEEGQLCMSQACTACDLTCPMGQVNADCDACMCQDFMLHGAISLPGGGPAPG 240 
WD40-rpts                                                                                      

Query      241 AAVYLLAKAPKMLTRTDSSGRFRVPGLCPDGKTILKITKTKFAPIMITMPKTSLKSATINAEFVRAETPYIVMNPEMKAR 320 
WD40-rpts                                                                                      

Query      321 RAGQSVSLCCKATGKPSPDKYFWYHNNTLLDPSLYKHESKLVLRNLQQDQAGEYFCKAQSDAGAVKSKVTQLTVIAHDET 400 
WD40-rpts                                                                                      

Query      401 PCNPTPESYLIRLPHDCFQNASNSFYYDVGRCPIKTCAGQQDNGIRCRDAVENCCGISRTEEREIQCSGYTLPTKVAVEC 480 
WD40-rpts                                                                                      

Query      481 SCQRCAETRSIVRGRVTAADNGEPMRFGHVYMGNNRVSMTGYKGTFTLHIPQDTERLVLTFVDRLQKFVNTTKVLPFNKK 560 
WD40-rpts                                                                                      

Query      561 GSAVFHEIKMLRQKEPITLEAMETNIIPLGEVIGEDPVAELEIPSKSFYRQNGEPFTGKVKASVTFLDPRNISTATAAQS 640 
WD40-rpts                                                                                      

Query      641 DLNFINDEGDTFPLRTYGMFSVDFRDEATSESLNAGKVKVHLDSTQVKMPEHVPAMKLWSLNPDTGLWEEEGDFKFESQR 720 
WD40-rpts                                                                                      

Query      721 RNKREERTFLVGNMEIRERRLFNLDVPESRRCFIKVRTYRSERFLPSEQIQGVVVSVINLEPRTGFSSNPRAWGRFDSVI 800 
WD40-rpts                                                                                      

Query      801 TGPNGACLPAFCDDQSPDAYSVYVLASLSGEELEAVESSPKFNPNAIGVPQPYLNKLKYRRTDHEDPRVKKTAFQISMAK 880 
WD40-rpts                                                                                      

Query      881 PRPNSAEESNGPIYAFENLRACEEAPPSAAHFRFYQIEGDRYDYNTVPFNEDDPMSWTEDYLAWWPKPMEFRACYIKVKI 960 
WD40-rpts                                                                                      

Query      961 VGPLEVNVRSRNMGGTHRQTVGKLYGIRDVKSTRDRDQPNVSSACLEFKCSGMLYDQDRVDRTLVKVIPQGSCHRASVNS 1040
WD40-rpts                                                                                      

Query     1041 MLHEYLVNHLPLAVNNDTSEYTMLAPLDPLGHNYGIYTVTDQDPRTAKEIALGRCFDGTSDGSSRIMKSNVGVALTFNCA 1120
WD40-rpts                              (___________________WD 1___________________)            

Query     1121 ERQVGRQSAFQYLQSTPARSPATGTVQGRVPAMRQQRASRGGLRRRGSMGPSEIFWCCSTTSEQLSLVVLSPFCPSHVTA 1200
WD40-rpts                                                                                      

Query     1201 VVRLMHRLSLVNLNISGLVQFVSLCLYLLSLPHDADCHRAPTMTKQRFSS 1250
WD40-rpts                                                        

1 WD40-repeats found in QUERY=ENSMUSP00000036631 (Len=1250):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 52  1065-1108     2.82  231.15  0.04672       20.0%     11.56

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1065-1108   APLDPLGHNYGIYTVTDQDPRTAKEIALGRCFDGTSDGSSRIMK

   WD40 Template    CLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD