WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000036603 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000036603 (Len=1502) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000036603, Len=1502): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKPEPRTLPPSPNWYCSRCSDAAPGGIFGFAARTSVFLVRVGPGAGASPGAPPFRVVGELVGHTERVSGFTFSHHPGQYN 80
WD40-rpts (__________________WD 1____
Query 81 LCATSSDDGTVKVWDVETKTVVTEHTLHQHTISALHWSPTVKDLIVSGDEKGVVFCYWLNRNDSQHLFTEPRTIFCLTCS 160
WD40-rpts ______________) (_________________WD 2________________) (_________________WD
Query 161 PHHENLVAIGYKDGIVVIIDISKKGEVIHRLRGHDDEIHSIAWCPLSGEDCLSISQEENSEEPDIPNGKLIAETPITKGC 240
WD40-rpts 3_________________) (_________________WD 4_________________)
Query 241 YLATGSKDQTIRIWSCSRGRGVMVLKLPFLKRRSGGVDPTVKERLWLTLHWPKNQPTQLVSSCFGGELLLWDLTQSWRRK 320
WD40-rpts (____________________WD 5____________________)
Query 321 YTLFSTSAEGHNHSRIVFNLCSLKTEDGKQLLLSTSMDRDVKCWDMATLECCWTLPSLGGFAYSLAFSPVDVGSLAIGVG 400
WD40-rpts (_________________WD 6_________________) (_________________WD 7__________
Query 401 DGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPNKEGCLAFGTDDGKVGLYDTCSNKPPQISSTYHKKTVYRLAWGP 480
WD40-rpts _______) (_________________WD 8_________________)(___________________WD 9_
Query 481 PVPPMSLGGEGDRPSLTLYSCGGEGVVLQHNPWKLSGEAFDINKLVRDTNSIRYKLPVHTEISWKGDGKVLALGNEDGSI 560
WD40-rpts _________________) (___________________WD10_______________
Query 561 EIFQVPNLRLLCTIQQHHKLVNAIVWHHEHGSRPELSCLLASGSNNAVIYVHNLKAVLESNPESPITITEPYRTLSGHTA 640
WD40-rpts ___) (____________________WD11____________________) (___________
Query 641 KITSLAWSPHHDGRLVSACYDGTAQVWDALREEPLFNFRGHRGRLLCVAWSPVDPECIYSGADDFCVYRWLTSMQDHSRP 720
WD40-rpts ______WD12_________________) (_________________WD13_________________)
Query 721 PQGKKCIELEKKRLSQFKPKLKKKKKPTLRLPVKQDSSVGNEDESVKENSGPAENGLSDQDGEEEAQEPELPPSPVVCVE 800
WD40-rpts (___
Query 801 PVSCTDICSGFEKSKVTVSSKATSLKKEPAKEKPEALLKKRKARSMLPLSTSLDHRSKEELHRDCLVLATATHAKAELNE 880
WD40-rpts ___________WD14_____________)
Query 881 DVSADLEERFHLGLFTDRATLYRMMETEGKGHLESGHPELFHQLMLWKGDLKGVLQAAAERGELTDSLVAVAPVAGYSVW 960
WD40-rpts
Query 961 LWAVEAFAKQLCFQDQYVKAASYLLSIHKVYEAVELLKSNHLYREAIAVAKARLRPEDPVLKELYLSWGSILERDGHYAI 1040
WD40-rpts
Query 1041 AAKCYLGATSAYDAAKVLARKGDAASLRTAAELAAIAGEHELAASLALRCAQELLLMKNWVGAQEALGLHESLQGQRLVF 1120
WD40-rpts
Query 1121 CLLELLCRHLEEKQPLEVRGPSSIYHQWATGSEGTLVQRVTGVWRSAFSVDTPEQCQAALQKLQDVKYPSATSNTPFRQL 1200
WD40-rpts
Query 1201 LLHVCHDLTLAMLSQQAAAWEEAVPALLQAVVRSYTSGNFTLMQEIYSAFLPGGCDHLRDKLGDLSPAMAAYKSLEAFCI 1280
WD40-rpts
Query 1281 YGQLYEVWWSLCGPGPESSVWVLSAESTVSDKQSKPEDSASAEDMEQPPGPGPRLSAESERLLSACKELFSERHASLQTS 1360
WD40-rpts
Query 1361 QRTVAEVQETLAEMIRQHQKSQLCKATTNGPSRDEPSRDEPSQEAERAPSQPPSPTEERNAPVSLPELTRRLTEANERIA 1440
WD40-rpts
Query 1441 EFPESVKAWPFPDVLECCLVLLHIGSQCPDAVDPEMQQQAQELLHKYGHTRAYRRHCQSRHT 1502
WD40-rpts
 14 WD40-repeats found in QUERY=ENSMUSP00000036603 (Len=1502): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 54-95 6.98 402.85 0.00023 37.5% 57.20 WD 2: Seg 8 99-137 5.73 351.37 0.00114 12.5% 58.05 WD 3: Seg 12 141-180 5.18 328.53 0.00232 22.5% 53.41 WD 4: Seg 16 185-224 5.78 353.62 0.00107 27.5% 49.13 WD 5: Seg 23 267-312 3.68 266.62 0.01578 25.0% 36.87 WD 6: Seg 28 326-365 6.59 386.85 0.00038 25.0% 40.17 WD 7: Seg 31 369-408 7.27 414.83 0.00016 40.0% 57.02 WD 8: Seg 35 416-455 6.24 372.61 0.00059 25.0% 45.90 WD 9: Seg 38 456-498 5.75 352.00 0.00112 15.0% 48.35 WD10: Seg 44 522-564 7.27 414.77 0.00016 30.0% 49.23 WD11: Seg 47 568-613 5.64 347.46 0.00129 25.0% 57.71 WD12: Seg 51 629-668 8.39 461.04 3.8e-05 55.0% 52.49 WD13: Seg 55 672-711 6.88 398.76 0.00026 30.0% 54.29 WD14: Seg 61 797-829 2.99 238.00 0.03794 7.5% 18.28Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 54-95 -FR---VVG---ELVGHTERV------SGFTFSH-H-------PGQYN-LCA-TSSDDGTVKVWD WD 2 99-137 -KT---VVT---EHTLHQHTI------SALHWSP-T-------V---K-DLI-VSGDEKGVVFCY WD 3 141-180 -RN---DSQ---HLFTEPRTI------FCLTCSP-H-------H---E-NLVAIGYKDGIVVIID WD 4 185-224 -GE---VIH---RLRGHDDEI------HSIAWCPLS-------G---E-DCL-SISQEENSEEPD WD 5 267-312 LPF---LKR---RSGGVDPTVKERLWLTLHWPKN-Q-------P---T-QLV-SSCFGGELLLWD WD 6 326-365 TSA---EGH---NHSRIVFNL------CSLKTED-G-------K---Q-LLL-STSMDRDVKCWD WD 7 369-408 -LE---CCW---TLPSLGGFA------YSLAFSPVD-------V---G-SLA-IGVGDGMIRVWN WD 8 416-455 -YD---VKN---FWQGVKSKV------TALCWHP-N-------K---EGCLA-FGTDDGKVGLYD WD 9 456-498 TCSNKPPQI---SSTYHKKTV------YRLAWGP-P-------V---P-PMS-LGGEGDRPSLTL WD10 522-564 INK---LVRDTNSIRYKLPVH------TEISWKG-D-------G---K-VLA-LGNEDGSIEIFQ WD11 568-613 -LR---LLC---TIQQHHKLV------NAIVWHH-EHGSRPELS---C-LLA-SGSNNAVIYVHN WD12 629-668 -TE---PYR---TLSGHTAKI------TSLAWSP-H-------H---DGRLV-SACYDGTAQVWD WD13 672-711 -EE---PLF---NFRGHRGRL------LCVAWSPVD-------P---E-CIY-SGADDFCVYRWL WD14 797-829 -------------VCVEPVSC------TDICSGF-E-------K---S-KVT-VSSKATSLKKEP WD40 Template TGE---CLR---TLSGHTSGV------TSVSFSP-D-------G---K-RLV-SGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |