Input parameters:

  Query = ENSMUSP00000036505 (Len=410)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000036505, Len=410):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEDAAEDAAAAAVEPATRPAAGPALWRLPEELLLLICSYLDTRALGRLAQVCRWLRRFTSCDLLWRPIARASLNTGFTR 80  
WD40-rpts                                                                                      

Query       81 LGTDLMAGIPVKERVKLSQNWRLGRCRDRILLKWRYSQMPWMQLQDASLYLSQANFILAYQFRPDGASLNRRPFRVFSGH 160 
WD40-rpts                                                                            (_________

Query      161 DEDVCHFVLANSHIVSAGGDGKIGVHKIHSTFTVKYSAHEQEVNCVDCKGGIIVSGSRDRTAKVWPLASGRLGQCLHTIQ 240 
WD40-rpts      _______WD 1_______________)  (________________WD 2_______________)   (__________

Query      241 TEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQLITHLGSDFPPGAGVLDVMYESPSTLLSCGYDTYVRYWDLR 320 
WD40-rpts      __________WD 3___________________)   (__________________WD 4_________________)(_

Query      321 TSTRKCVMEWEEPHDSTFYCLQTDGNHLLATGSSYYGLVRLWDRRQRACLHAFSLTSTPLSSPVYCLRFTTRHLYAALSY 400 
WD40-rpts      ___________________WD 5___________________)   (_________________WD 6____________

Query      401 NLHVLDFQNP 410 
WD40-rpts      _____)    

6 WD40-repeats found in QUERY=ENSMUSP00000036505 (Len=410):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   151-187      6.84  397.32  0.00027       30.0%     47.17
  WD 2:  Seg  9   190-226      7.10  407.97  0.00020       35.0%     47.64
  WD 3:  Seg 13   230-274      6.18  369.88  0.00064       25.0%     52.53
  WD 4:  Seg 17   278-318      6.36  377.38  0.00051       25.0%     54.03
  WD 5:  Seg 21   319-363      7.28  415.25  0.00016       15.0%     43.18
  WD 6:  Seg 25   367-406      4.65  306.56  0.00459       17.5%     32.40

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  151-187    -RR-----PFRVFS--GHD---EDV--CHFVLA-NSHIVSAG----GDGKIGVHK
   WD 2  190-226    -ST-----FTVKYS--AHE---QEVNCV--DCK-GGIIVSGS----RDRTAKVWP
   WD 3  230-274    -GR-----LGQCLHTIQTE---DRVWSIAISPL-LSSFVTGTACCGHFSPLRIWD
   WD 4  278-318    -GQ-----LITHLG--SDFPPGAGVLDVMYESP-S-TLLSCG----YDTYVRYWD
   WD 5  319-363    LRTSTRKCVMEWEE--PHD---STFYCLQTDGN-HLLATGSS----YYGLVRLWD
   WD 6  367-406    -RA-----CLHAFS--LTS---TPLSSPVYCLRFTTRHLYAA----LSYNLHVLD

   WD40 Template    TGE-----CLRTLS--GHT---SGVTSVSFSPD-GKRLVSGS----EDGTIKVWD