WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000034787 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000034787 (Len=1821) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000034787, Len=1821): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSRERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTYQNLVKYYRHLAPDHLLQICH 80
WD40-rpts
Query 81 RLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCKHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYR 160
WD40-rpts (_________________WD 1________________)___________________WD 2________________
Query 161 LERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMI 240
WD40-rpts __) (_______________WD 3_______________) (_________________WD 4____
Query 241 AAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPTKFTERPRP 320
WD40-rpts ____________)(____________________WD 5____________________)(____________________
Query 321 GVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWK 400
WD40-rpts __WD 6______________________) (_______________WD 7______________)
Query 401 SILLDMATRPAGQNLQGIEDKITKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPR 480
WD40-rpts (___________________WD 8___________________) (_________________WD 9___
Query 481 VLFSAGHDGNVIVWDLARGVKVRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHS 560
WD40-rpts ______________) (___________________WD10___________________)
Query 561 DYRPLIRDANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQDI 640
WD40-rpts
Query 641 SPLDSMIQRLQQEQDLRRSGEAGVSNASRVNRGSVSSTSEVHSPPNIGLRRSGQIEGVRQMHSNAPRSEIATERDLVAWS 720
WD40-rpts
Query 721 RRVVVPELSAGVASRQEEWRTAKGEEEIKSYRSEEKRKHLTVAKENKILTVSKNHAHEHFLDLGDSKKQQANQHNYRTRS 800
WD40-rpts
Query 801 ALEETPRPLEELENGTSSSDEGEVLAVSGGTSEEEERAWHSDGSSSDYSSDYSDWTADAGINLQPPKKVPKHKTKKPESS 880
WD40-rpts
Query 881 SDEEEESENQKQKHIKKERKKANEEKDGPTSPKKKKPKERKQKRLAVGELTENGLTLEEWLPSAWITDTLPRRCPFVPQM 960
WD40-rpts
Query 961 GDEVYYFRQGHEAYVEMARKNKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCCLKLAFLDPDTGKLTGGSFTM 1040
WD40-rpts
Query 1041 KYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFRSVIDDAWWFGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEKMSPWDM 1120
WD40-rpts
Query 1121 ELIPNNAVFPEELGTSVPLTDVECRSLIYKPLDGEWGANPRDEECERIVGGINQLMTLDIASAFVAPVDLQAYPMYCTVV 1200
WD40-rpts
Query 1201 AYPTDLSTIKQRLENRFYRRFSSLMWEVRYIEHNTRTFNEPGSPIVKSAKFVTDLLLHFIKDQTCYNIIPLYNSMKKKVL 1280
WD40-rpts
Query 1281 SDSEEEEKDADVPGTSTRKRKDHQPRRRLRNRAQSYDIQAWKKQCQELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTP 1360
WD40-rpts
Query 1361 MDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTISKK 1440
WD40-rpts
Query 1441 RKKRNRSSSLSSSAASSPERKKRILKPQLKSEVSTSPFSIPTRSVLPRHNAAQMNGKPESSSVVRTRSNRVAVDPVVTEQ 1520
WD40-rpts
Query 1521 PSTSSATKAFVSKTNTSAMPGKAMLENSVRHSKALSTLSSPDPLTFSHATKNNSAKENMEKEKPVKRKMKSSVFSKASPL 1600
WD40-rpts
Query 1601 PKSAAVIEQGECKNNVLIPGTIQVNGHGGQPSKLVKRGPGRKPKVEVNTSSGEVTHKKRGRKPKNLQCAKQENSEQNNMH 1680
WD40-rpts
Query 1681 PIRADVLPSSTCNFLSETNAVKEDLLQKKSRGGRKPKRKMKTHNLDSELIVPTNVKVLRRSNRKKTDDPIDEEEEFEELK 1760
WD40-rpts
Query 1761 GSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSLTFGTSSRGRVRKLTEKAKANLIGW 1821
WD40-rpts
 10 WD40-repeats found in QUERY=ENSMUSP00000034787 (Len=1821): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 83-121 3.91 276.21 0.01174 12.5% 21.43 WD 2: Seg 3 121-163 3.93 276.99 0.01146 22.5% 36.06 WD 3: Seg 6 176-211 8.31 457.94 4.2e-05 32.5% 47.84 WD 4: Seg 9 215-253 9.08 489.53 1.6e-05 30.0% 53.07 WD 5: Seg 13 254-299 7.90 441.16 7.0e-05 42.5% 54.74 WD 6: Seg 17 300-349 5.43 338.96 0.00168 25.0% 45.24 WD 7: Seg 20 359-393 8.66 472.31 2.7e-05 40.0% 48.28 WD 8: Seg 24 409-452 4.88 316.40 0.00339 22.5% 42.01 WD 9: Seg 27 456-495 7.95 442.99 6.7e-05 35.0% 53.44 WD10: Seg 31 499-542 4.52 301.57 0.00536 22.5% 50.72Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 83-121 GPL----------L--EQEI---PQSVP-----G-----VQTL-LGA----GRQSLLRTNKSCKHVVWK WD 2 121-163 KGS----------A--LAALHCGRPPES-----P-----VNYGSPPS----IADTLFSRKLNGKYRLER WD 3 176-211 ----------------HKRI---LGHLS-----S-----VYCVTFDR----TGRRIFTGSDDCLVKIWA WD 4 215-253 -GR----------L--LATL---RGHAA-----E-----ISDMAVNY----ENTMIAAGSCDKMIRVWC WD 5 254-299 LRT----------CAPLAVL---QGHSA-----S-----ITSLQFSPLCSGSKRYLSSTGADGTICFWL WD 6 300-349 WDAGTLKINPRPTK--FTER---PRPGV-----Q-----MICSSFSA----GGMFLATGSTDHIIRVYF WD 7 359-393 -----------------SEL---EFHTD-----K-----VDSIQFSN----TSNRFVSGSRDGTARIWQ WD 8 409-452 -RP----------A--GQNL---QGIEDKITKMK-----VTMVAWDR----HDNTVITAVNNMTLKVWN WD 9 456-495 -GQ----------L--IHVL---MGHED-----E-----VFVLEPHP---FDPRVLFSAGHDGNVIVWD WD10 499-542 -GV----------K--VRSY---FNMIE-----GQGHGAVFDCKCSP----DGQHFACTDSHGHLLIFG WD40 Template TGE----------C--LRTL---SGHTS-----G-----VTSVSFSP----DGKRLVSGSEDGTIKVWD |
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