Input parameters:

  Query = ENSMUSP00000034210 (Len=502)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000034210, Len=502):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFSGDSEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHLSKDKRVKSGKQAGASKLLRDA 80  
WD40-rpts                                                                                      

Query       81 RGLPVERLSHRPLEPGKSKPSSHKRKRVNSPLSRPKKGSSGKAPDRATKTVSYRTTPSGLQIMPLKKAQNGLENGDAGSE 160 
WD40-rpts                                                                                      

Query      161 KDESHFGNGSHQPDLELNDQLGEQEASDCDGTHSALVENGVGSALTNGGLNLHSPVKRKLETEKDYVFDKRLRYSVRQNE 240 
WD40-rpts                                                                                      

Query      241 SNCRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDR 320 
WD40-rpts                   (____________________________WD 1___________________________)      

Query      321 RKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGV 400 
WD40-rpts                                                                                      

Query      401 ALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEEVNEKECVMLKQ 480 
WD40-rpts                                                                                      

Query      481 LWSSSKGLDSLFSYLQDKIYEV 502 
WD40-rpts                            

1 WD40-repeats found in QUERY=ENSMUSP00000034210 (Len=502):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   254-314      2.87  233.09  0.04406       20.0%     12.03

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  254-314    EGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIG

   WD40 Template    TGECLRTLSGHTSGVTSVS---------------FSPDGKRLVSGSEDGTIKVWD------