Input parameters:

  Query = ENSMUSP00000033990 (Len=1401)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000033990, Len=1401):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METTSLQRKFPEWMSMQSQRCATEEKACVQKSVLEDNLPFLEFPGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWP 80  
WD40-rpts                                       (_____________________WD 1____________________)

Query       81 PIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVAN 160 
WD40-rpts                                                                                      

Query      161 EKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTAQVFALNKAEENL 240 
WD40-rpts                                                                                      

Query      241 PLEMKKQLNSISEEMRDLANRFPVTCRNLETLQRVPVILKSISENLCSLRKVICGPTNTETRLKPGSSFNLLSSEDSAAA 320 
WD40-rpts                                                                                      

Query      321 GEKEKQIGKHSTFAKIKEEPWDPELDSLVKQEEVDVFRNQVKQEKGESENEIEDNLLREDMERTCVIPSISENELQDLEQ 400 
WD40-rpts                                                                                      

Query      401 QAKEEKYNDVSHQLSEHLSPNDDENDSSYIIESDEDLEMEMLKSLENLNSDVVEPTHSTWLEMGTNGRLPPEEEDGHGNE 480 
WD40-rpts                                                                                      

Query      481 AIKEEQEEEDHLLPEPNAKQINCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560 
WD40-rpts                                                                                      

Query      561 PLISLMEDQVLQLELSNVPACLLGSAQSKNILGDVKLGKYRVIYITPEFCSGNLDLLQQLDSSIGITLIAVDEAHCISEW 640 
WD40-rpts                                                                                      

Query      641 GHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVR 720 
WD40-rpts                                                                                      

Query      721 KASSAWEFEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRK 800 
WD40-rpts                                                                                      

Query      801 VIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKLKMMVKMEKYLHSSQCRRRIILS 880 
WD40-rpts                                                                                      

Query      881 HFEDKCLQKASLDIMGTEKCCDNCRPRLNHCLTANNSEDASQDFGPQAFQLLSAVDILQEKFGIGIPILFLRGSNSQRLP 960 
WD40-rpts                                                                                      

Query      961 DKYRGHRLFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASSQSPPSLLLQANEEMFPRKV 1040
WD40-rpts                                                                                      

Query     1041 LLPSSNPVSPETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGTNIPKKSAVMPSPGTSSSPLEPAISAQELDARTG 1120
WD40-rpts                                                                                      

Query     1121 LYARLVEARQKHANKMDVPPAILATNKVLLDMAKMRPTTVENMKQIDGVSEGKAALLAPLLEVIKHFCQVTSVQTDLLSS 1200
WD40-rpts                                                                                      

Query     1201 AKPHKEQEKSQEMEKKDCSLPQSVAVTYTLFQEKKMPLHSIAENRLLPLTAAGMHLAQAVKAGYPLDMERAGLTPETWKI 1280
WD40-rpts                                                                                      

Query     1281 IMDVIRNPPINSDMYKVKLIRMLVPENLDTYLIHMAIEILQSGSDSRTQPPCDSSRKRRFPSSAESCESCKESKEAVTET 1360
WD40-rpts                                                                                      

Query     1361 KASSSESKRKLPEWFAKGNVPSADTGSSSSMAKTKKKGLFS 1401
WD40-rpts                                               

1 WD40-repeats found in QUERY=ENSMUSP00000033990 (Len=1401):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    34-80       3.03  239.93  0.03578       25.0%     -3.08

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   34-80     LEDNLPFLEFPGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWP

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKR-------LVSGSEDGTIKVWD