Input parameters:

  Query = ENSMUSP00000033720 (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000033720, Len=425):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVV 80  
WD40-rpts                                                                                      

Query       81 ARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKP 160 
WD40-rpts                                             (______________WD 1_____________)        

Query      161 DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 240 
WD40-rpts           (_________________WD 2_________________)(______________________WD 3________

Query      241 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIF 320 
WD40-rpts      ______________)      (_________________WD 4_________________)(__________________

Query      321 QVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 400 
WD40-rpts      _WD 5___________________)(__________________________WD 6________________________

Query      401 WQMAENIYNDEESDVTASELEGQGS 425 
WD40-rpts      _)                       

6 WD40-repeats found in QUERY=ENSMUSP00000033720 (Len=425):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   120-152      3.50  259.34  0.01975       12.5%     44.03
  WD 2:  Seg  9   166-205      5.60  346.15  0.00135       27.5%     51.19
  WD 3:  Seg 13   206-255      5.71  350.70  0.00117       22.5%     50.58
  WD 4:  Seg 17   262-301      7.17  410.65  0.00018       32.5%     52.86
  WD 5:  Seg 21   302-345      6.90  399.85  0.00025       30.0%     51.62
  WD 6:  Seg 25   346-402      5.60  346.13  0.00135       30.0%     56.13

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  120-152    ---------------------------INHEGEVNRARYMPQNP-HII-ATKTPSSDVLVFD
   WD 2  166-205    -C----------------NP---DLRLRGHQKEGYGLSWNSNLSGH-L-LSASDDHTVCLWD
   WD 3  206-255    IN-------AGPKEGKIVDA---KAIFTGHSAVVEDVAWHLLHE-S-LFGSVADDQKLMIWD
   WD 4  262-301    -S----------------KP---SHLVDAHTAEVNCLSFNPYSEFI-L-ATGSADKTVALWD
   WD 5  302-345    LR----------------NLKLKLHTFESHKDEIFQVHWSPHNE-TIL-ASSGTDRRLNVWD
   WD 6  346-402    LSKIGEEQSAEDAEDGPPEL---LFIHGGHTAKISDFSWNPNEPWV-I-CSVSEDNIMQIWQ

   WD40 Template    TG----------------EC---LRTLSGHTSGVTSVSFSPDGK-R-L-VSGSEDGTIKVWD