Input parameters:

  Query = ENSMUSP00000033506 (Len=485)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000033506, Len=485):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSN 80  
WD40-rpts                                                              (____________WD 1_______

Query       81 SIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAF 160 
WD40-rpts      _____)                (_______________WD 2______________)                       

Query      161 AGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDAT 240 
WD40-rpts       (_________________WD 3_________________)     (_________________WD 4____________

Query      241 MRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLW 320 
WD40-rpts      ____)   (__________________WD 5_________________)   (__________________WD 6_____

Query      321 AGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGALQLKRSFP 400 
WD40-rpts      _____________)            (__________________WD 7__________________)(___________

Query      401 IEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVW 480 
WD40-rpts      ___________WD 8_____________________)     (_________________WD 9________________

Query      481 RREQK 485 
WD40-rpts      )    

9 WD40-repeats found in QUERY=ENSMUSP00000033506 (Len=485):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    57-86       4.82  313.82  0.00367        5.0%     34.12
  WD 2:  Seg  5   103-137      3.96  278.22  0.01103       15.0%     29.61
  WD 3:  Seg  9   162-201      6.41  379.44  0.00048       27.5%     51.85
  WD 4:  Seg 13   207-245      9.47  505.93  9.4e-06       37.5%     56.25
  WD 5:  Seg 17   249-289      6.32  375.53  0.00054       22.5%     56.11
  WD 6:  Seg 21   293-334      6.45  381.06  0.00046       27.5%     52.90
  WD 7:  Seg 26   347-388      6.66  389.85  0.00035       10.0%     39.34
  WD 8:  Seg 30   389-437      6.49  382.57  0.00043       25.0%     44.51
  WD 9:  Seg 33   443-481      8.79  477.58  2.3e-05       32.5%     46.37

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   57-86     ---------------L-RGQ-LLGQ----RYGPLSE-PG-SARAYSNSI--VRSS
   WD 2  103-137    -----L-----GARGH-RRS-VSRG----SYQLQAQ-MN-RAVYEDRPP--GSVV
   WD 3  162-201    -GMYHV-----FDQHV-DEA-VPRV----RFANDDRHRL-ACCSLDGSI--SLCQ
   WD 4  207-245    -PTVLH-----VLRGH-TRG-VSDF----AWSLSND-IL-VSTSLDATM--RIWA
   WD 5  249-289    -GRCIR-----EIPDP-DGAELLCC----TFQPVNN-NLTVVGNAKHNV--HVMN
   WD 6  293-334    -GKKVK-----GGSSKLTGR-VLAL----SFDAPGR-LL-WAGDDRGSVFSFLFD
   WD 7  347-388    VVHEGS-----PVTSI-SAR-SWVS----REARDPS-LL-INACLNKLLLYRVVD
   WD 8  389-437    NEGALQLKRSFPIEQS-SHP-VRSIFCPLMSFRQGA-CV-VTGSEDMCV--HFFD
   WD 9  443-481    -KAAVN-----KLQGH-SAP-VLDV----SFNCDES-LL-ASSDASGMV--IVWR

   WD40 Template    TGECLR-----TLSGH-TSG-VTSV----SFSPDGK-RL-VSGSEDGTI--KVWD