Input parameters:

  Query = ENSMUSP00000032949 (Len=461)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000032949, Len=461):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80  
WD40-rpts                                                                            (_________

Query       81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 
WD40-rpts      ________WD 1_________________)          (_________________WD 2_________________)

Query      161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 
WD40-rpts      (___________________WD 3___________________)   (___________________WD 4_________

Query      241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 
WD40-rpts      __________)(____________________WD 5___________________)(____________________WD 

Query      321 YMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPK 400 
WD40-rpts      6____________________)                                                          

Query      401 SRELRVNRGLDSARRRATPEPSGTPSSDTVSRLEEDVRNLNAIVQKLQERLDRLEETVQAK 461 
WD40-rpts                                                                   

6 WD40-repeats found in QUERY=ENSMUSP00000032949 (Len=461):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    71-110      7.68  432.02  9.4e-05       32.5%     45.61
  WD 2:  Seg 10   121-160      7.39  419.81  0.00014       40.0%     51.66
  WD 3:  Seg 14   161-204      7.61  428.87  0.00010       22.5%     48.24
  WD 4:  Seg 18   208-251      4.74  310.50  0.00406       25.0%     43.48
  WD 5:  Seg 22   252-296      5.46  340.28  0.00161       30.0%     42.40
  WD 6:  Seg 26   297-342      3.05  240.80  0.03484       10.0%     41.31

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-110    -DK-----NVPLVC----GHTAPVLDIA--WCPHNDNV-I-ASG---SE-DCTVMVWE
   WD 2  121-160    -RE-----PVITLE----GHTKRVGIVA--WHP-TAQNVL-LSA---GC-DNVILVWD
   WD 3  161-204    VGT-GAAVLTLGPD----VHPDTIYSVD--WSR-DGAL-I-CTS---CR-DKRVRVIE
   WD 4  208-251    -GT-----VVAEKD----RPHEGTRPVHAVFVS-EGKI-L-TTGFSRMS-ERQVALWD
   WD 5  252-296    TKH-----LEEPLSLQELDTSSGVLLPF--FDP-DTNI-VYLCG---KG-DSSIRYFE
   WD 6  297-342    ITSEAPFLHYLSMF----SSKESQRGMG--YMP-KRGL-E-VNK---CEIARFYKLHE

   WD40 Template    TGE-----CLRTLS----GHTSGVTSVS--FSP-DGKR-L-VSG---SE-DGTIKVWD