WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000032570 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000032570 (Len=665) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000032570, Len=665): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAGGAEGGPGPSAAMGDCAEIKSQFRTREGFYKLLPGDATRRSGPTSAQTPAPPQPTQPPPGPAAASGPGAAGPASSPP 80
WD40-rpts (________________
Query 81 PAGPGPGPALPAVRLSLVRLGDPDGAGEPPSTPSGLGAGGDRVCFNLGRELYFYPGCCRSGSQRSIDLNKPIDKRIYKGT 160
WD40-rpts _WD 1________________)___________________WD 2_____________________) (_________
Query 161 QPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNV 240
WD40-rpts _________WD 3__________________) (__________
Query 241 SHPCTSTPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMK 320
WD40-rpts ______WD 4________________) (_________________WD 5________________) (_______
Query 321 SYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEEAASASADGDPSGEEEEPE 400
WD40-rpts __________WD 6________________) (__________________WD 7__________________)(___
Query 401 VTSSDTGAPVSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLSPHPSLARTRTLPGTPGATPPASGSSRAGETGAGPLPR 480
WD40-rpts ______________WD 8_________________) (____
Query 481 SLSRSNSLPHPAGGGKAGGPSASMEPGIPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGSGGNSSNDKLSGPAP 560
WD40-rpts _____________WD 9________________)(__________________WD10_________________)
Query 561 RSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAFTDEETEAQAGQASW 640
WD40-rpts (________________WD11_______________)
Query 641 PRSPSKSVVEGISSQPGSSPSGTVV 665
WD40-rpts
 11 WD40-repeats found in QUERY=ENSMUSP00000032570 (Len=665): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 64-102 3.67 266.21 0.01598 5.0% -22.78 WD 2: Seg 4 100-147 4.68 308.11 0.00438 10.0% 22.67 WD 3: Seg 7 151-192 5.82 355.13 0.00102 15.0% 54.29 WD 4: Seg 13 230-267 4.74 310.33 0.00409 12.5% 14.54 WD 5: Seg 16 271-309 8.96 484.79 1.8e-05 27.5% 55.07 WD 6: Seg 20 313-351 9.35 500.75 1.1e-05 30.0% 54.76 WD 7: Seg 24 355-396 7.51 425.02 0.00012 30.0% 34.50 WD 8: Seg 27 397-436 5.81 354.62 0.00103 20.0% 37.79 WD 9: Seg 31 476-514 6.36 377.49 0.00051 17.5% 27.81 WD10: Seg 34 515-555 2.98 237.72 0.03827 10.0% 8.30 WD11: Seg 37 584-620 5.83 355.63 0.00100 20.0% 45.49Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 64-102 -PA--------AASGPGAAGP---ASSPPPAGP---GPG----PALPAVRLSLVRLGD WD 2 100-147 LGDPDGAGEPPSTPSGLGAGG---DRVCFNLGR---ELY----FYPGCCRSGSQRSID WD 3 151-192 -PI--------DKRIYKGTQPTCHDFNQFTAAT---ETI----SLLVGFSAGQVQYLD WD 4 230-267 --H--------ASGHLYLYNV---SHPCTSTPP---QYS----LLKQGEGFAVYAAKS WD 5 271-309 -RN--------PLAKWAVGEG---PLNEFAFSP---DGR----HLACVSQDGCLRVFH WD 6 313-351 -ML--------LRGLMKSYFG---GLLCVCWSP---DGR----YVVTGGEDDLVTVWS WD 7 355-396 -GR--------VVARGHGHKS---WVNAVAFDPYTTRAE----EAASASADGDPSGEE WD 8 397-436 ------------EEPEVTSSD---TGAPVSPLP---KAGSITYRFGSAGQDTQFCLWD WD 9 476-514 -GP--------LPRSLSRSNS---LPHPAGGGK---AGG----PSASMEPGIPFSIGR WD10 515-555 FAT-------LTLQERRDRGA---EKEHKRYHS---LGN----ISRGGSGGNSSNDKL WD11 584-620 -LE--------PLVCKKIAQE---RLTVLLFLE---DC------IITACQEGLICTWA WD40 Template TGE--------CLRTLSGHTS---GVTSVSFSP---DGK----RLVSGSEDGTIKVWD |
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