Input parameters:

  Query = ENSMUSP00000032440 (Len=322)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000032440, Len=322):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSVMNTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80  
WD40-rpts               (_____________WD 1_____________)(____________________WD 2______________

Query       81 RKVIIWKEENGTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 
WD40-rpts      ______)     (__________________WD 3_________________) (_________________________

Query      161 AVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 
WD40-rpts      ___WD 4___________________________)      (___________________WD 5_______________

Query      241 FIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASITEGQQN 320 
WD40-rpts      ___)(____________________WD 6____________________)                              

Query      321 EQ 322 
WD40-rpts        

6 WD40-repeats found in QUERY=ENSMUSP00000032440 (Len=322):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-41       7.26  414.53  0.00016       22.5%     47.48
  WD 2:  Seg  4    42-87       7.48  423.62  0.00012       27.5%     54.19
  WD 3:  Seg  8    93-133      7.82  437.73  7.8e-05       40.0%     54.59
  WD 4:  Seg 12   135-195      7.25  414.01  0.00016       40.0%     55.91
  WD 5:  Seg 16   202-244      7.77  435.63  8.4e-05       25.0%     53.85
  WD 6:  Seg 20   245-290      7.82  437.51  7.9e-05       20.0%     52.36

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-41     TS------------------HEDMIHDAQMDYY----G-----------------TRLATCSSDRSVKIFD
   WD 2   42-87     VR----N--GGQILIADLRGHEGPVWQVAWAHP--MYG-----------------NILASCSYDRKVIIWK
   WD 3   93-133    -W----E------KTHEHSGHDSSVNSVCWAPH--DYG-----------------LILACGSSDGAISLLT
   WD 4  135-195    TGEGQWE------VKKINNAHTIGCNAVSWAPA----VVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWR
   WD 5  202-244    -W----K------EEQKLEAHSDWVRDVAWAPSIGLPT-----------------STIASCSQDGRVFIWT
   WD 6  245-290    CD----DASGNMWSPKLLHKFNDVVWHVSWSIT----A-----------------NILAVSGGDNKVTLWK

   WD40 Template    TG----E------CLRTLSGHTSGVTSVSFSPD----G-----------------KRLVSGSEDGTIKVWD