Input parameters:

  Query = ENSMUSP00000031309 (Len=404)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000031309, Len=404):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAGEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCVVKLVPWPLEEQFIPKGFEAKSRSSKNDPKGR 80  
WD40-rpts                     (_________________WD 1________________)  (_________________WD 2__

Query       81 GSLKEKTLDCGQIVWGLAFSPWPSPPSRKLWARHHPQAPDVSCLILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLS 160 
WD40-rpts      _______________)  (__________________WD 3_________________)   (_________________

Query      161 FTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQS 240 
WD40-rpts      WD 4_________________)    (_________________WD 5________________)   (___________

Query      241 SVVSCDFSPDSALLVTASYDTSVIMWDPYTGERLRSLHHTQLEPTMDDSDVHMSSLRSVCFSPEGLYLATVADDRLLRIW 320 
WD40-rpts      ______WD 6________________)          (___________________WD 7___________________

Query      321 ALELKAPVAFAPMTNGLCCTFFPHGGIIATGTRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLT 400 
WD40-rpts      )(_________________WD 8_________________)(_________________WD 9________________)

Query      401 YRTF 404 
WD40-rpts          

9 WD40-repeats found in QUERY=ENSMUSP00000031309 (Len=404):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    16-54       8.31  457.76  4.2e-05       22.5%     54.14
  WD 2:  Seg  6    57-96       6.55  385.13  0.00040       22.5%     50.82
  WD 3:  Seg 10    99-139      6.91  400.17  0.00025       22.5%     43.48
  WD 4:  Seg 13   143-182      9.29  498.60  1.2e-05       47.5%     56.50
  WD 5:  Seg 17   187-225      9.49  506.72  9.2e-06       32.5%     56.81
  WD 6:  Seg 21   229-267     10.15  534.01  3.9e-06       42.5%     54.39
  WD 7:  Seg 26   278-321      8.82  479.17  2.2e-05       27.5%     42.83
  WD 8:  Seg 29   322-361      7.07  406.80  0.00020       17.5%     47.79
  WD 9:  Seg 32   362-400      5.54  343.66  0.00145       10.0%     44.56

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-54     -G----RPHQFDWKSSCETWSVAFSPDGS--W-FAWSQGHCVVKLVP
   WD 2   57-96     -L----EEQFIPKGFEAKSRSSKNDPKGR-GS-LKEKTLDCGQIVWG
   WD 3   99-139    -F----SPWPSPPSRKLWARHHPQAPDVSCLI-LATGLNDGQIKIWE
   WD 4  143-182    -G----LLLLNLSGHQDVVRDLSFTPSGS--LILVSASRDKTLRIWD
   WD 5  187-225    -G----KQIQVLSGHLQWVYCCSISPDCS--M-LCSAAGEKSVFLWS
   WD 6  229-267    -Y----TLIRKLEGHQSSVVSCDFSPDSA--L-LVTASYDTSVIMWD
   WD 7  278-321    HHTQLEPTMDDSDVHMSSLRSVCFSPEGL--Y-LATVADDRLLRIWA
   WD 8  322-361    LE----LKAPVAFAPMTNGLCCTFFPHGG--I-IATGTRDGHVQFWT
   WD 9  362-400    -A----PRVLSSLKHLCRKALRSFLTTYQ--V-LALPIPKKMKEFLT

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGK--R-LVSGSEDGTIKVWD