Input parameters:

  Query = ENSMUSP00000031072 (Len=807)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000031072, Len=807):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRFPTCFPSFRVVGEKQLPQEIIFLAWSPKRDLIALANTTGEVLLHRLASFHRVWSFPPNESTGKEVTCLAWRPDGKLL 80  
WD40-rpts                                                      (____________________WD 1_______

Query       81 AFALADTKKIILCDVEKPESLHSFSVEAPVSCMHWTEVTVESSVLTSFYNAEDESNLLLPKLPTLPKNYNSTSKIFSEEN 160 
WD40-rpts      _____________)                                                                  

Query      161 SDEIIKLLGDVRLNILVLGGSSGFIELYAYGMFKIARVTGIAGTCIALCLSSDLKSLSVVTEVSSGGESEVSYFQLETNL 240 
WD40-rpts                                                                                      

Query      241 LYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILMQMDSRLTKFVQEKPTTTSVQDEFMHLLLWGKASAELQTL 320 
WD40-rpts                                                                                      

Query      321 LMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEDAITAVGSFILKA 400 
WD40-rpts                                                                                      

Query      401 NELLQVIDSSMKNFKAFFRWLYVAMLRMTEDHVLPELNKMTQKDITFVAEFLTEHFNEAPDLYNRKGKYFNVERVGQYLK 480 
WD40-rpts                                                                                      

Query      481 DEDDDLVSPPNTEGNQWYDFLQNSTHLKESPLLFPYYPRKSLHFVKRRMENVIDQCLQKPADVIGRSMNQAICIPLYKDA 560 
WD40-rpts                                                                                      

Query      561 RSMDCARRLLKFPFLWNNKTSNLHYLLFTILEDSVYKMCILRRHTDISQSVSNGLIGIKFGSFTSASADKVRRSSYSCLD 640 
WD40-rpts                                                                                      

Query      641 AQFYDDETVTVILKDSMGREGRDRILVQLSLSLVYNSEDSDEYEFTGSYSTRLDEQGSIIPTRTMHFEKHWRLLESMRAQ 720 
WD40-rpts                                                                                      

Query      721 YVAGNGLRKVSCVLSSNLRHVRVFEMDIDDEWEIDESSDDEEEAGGKPVKIKEEVLSESETEAHQDAAALDPDVVIKVEK 800 
WD40-rpts                                                                                      

Query      801 LDPELDS 807 
WD40-rpts             

1 WD40-repeats found in QUERY=ENSMUSP00000031072 (Len=807):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    49-94       3.55  261.17  0.01867       30.0%     50.57

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-94     LASFHRVWSFPPNESTGKEVTCLAWRPDGKLLAFALADTKKIILCD

   WD40 Template    TGECLRTLS-----GHTSGVTSVSFSPDGKRLVSGSED-GTIKVWD