Input parameters:

  Query = ENSMUSP00000030895 (Len=462)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000030895, Len=462):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFSESFKLSGLLCRFSPDGKYLASCVQYRLVIRDVTTLQILQLYTCLDQIQHIEWSADSLFILCAMYRRGLVQVWSLEQ 80  
WD40-rpts      (_______________WD 1______________)  (_________________WD 2_________________)   

Query       81 PEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGLTFTRDGRYLALAERRDCRDYV 160 
WD40-rpts      (_________________WD 3_________________)  (__________________WD 4_______________

Query      161 SIFVCSDWQLLRHFDTDTQDLTGIEWAPNGCVLAAWDTCLEYKVLLYSLDGRLLSAYCAYEWSLGIKSVAWSPSSQFLAI 240 
WD40-rpts      ___)   (__________________WD 5_________________)  (__________________WD 6_______

Query      241 GSYDGKVRLLNHVTWKMITEFGHPATINNPKTVVYKEAEKSPLLGLGHLSFPPPRAMAGALSTSESKYEIASGPVSLQTL 320 
WD40-rpts      __________)                 (__________________WD 7_________________)         (_

Query      321 KPVADRANPRMGVGMLAFSSDSYFLASRNDNVPNAVWIWDIQKLKLFVVLEHMSPVRSFQWDPQQPRLAICTGGSKVYLW 400 
WD40-rpts      _________________WD 8__________________)(__________________WD 9_________________

Query      401 SPAGCVSVQVPGEGDFPVLGLCWHLSGDSLALLSKDHFCLCFLETKERVGTAYEQRDGMPRT 462 
WD40-rpts      )   (_________________WD10________________)                   

10 WD40-repeats found in QUERY=ENSMUSP00000030895 (Len=462):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       6.07  365.47  0.00074       22.5%     35.43
  WD 2:  Seg  4    38-77       6.43  380.47  0.00046       15.0%     55.24
  WD 3:  Seg  8    81-120      7.24  413.57  0.00017       25.0%     57.46
  WD 4:  Seg 12   123-164      6.29  374.44  0.00056       10.0%     54.75
  WD 5:  Seg 16   168-208      6.99  403.57  0.00023       17.5%     54.84
  WD 6:  Seg 20   211-251      7.80  436.94  8.0e-05       30.0%     57.53
  WD 7:  Seg 26   269-309      2.94  235.91  0.04044       15.0%     40.97
  WD 8:  Seg 31   319-360      8.85  480.09  2.1e-05       25.0%     44.68
  WD 9:  Seg 34   361-401      7.67  431.52  9.5e-05       22.5%     55.39
  WD10:  Seg 38   405-443      6.61  387.73  0.00037       12.5%     48.98

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     -----MNFSESF--KL---SGLLCRFSPDGKY-LASCV-Q--Y--RL---V-IRD
   WD 2   38-77     -TLQ-ILQLYTC--LD---QIQHIEWSADSLF-ILCAMYR--R--GL---VQVWS
   WD 3   81-120    -PEW-HCKIDEG--SA---GLVASCWSPDGRHILNTTE-F--H--LR---ITVWS
   WD 4  123-164    -TKS-VSYIKYP--KA---CQQGLTFTRDGRY-LALAE-R--R--DCRDYVSIFV
   WD 5  168-208    -WQL-LRHFDTD--TQ---DLTGIEWAPNGCV-LAAWD-TCLE--YK---VLLYS
   WD 6  211-251    -GRL-LSAYCAYEWSL---GIKSVAWSPSSQF-LAIGS-Y--D--GK---VRLLN
   WD 7  269-309    NPKT-VVYKEAE--KSPLLGLGHLSFPPPRA---MAGA-L--S--TS---ESKYE
   WD 8  319-360    TLKP-VADRANP--RM---GVGMLAFSSDSYF-LASRN-D--NVPNA---VWIWD
   WD 9  361-401    IQKLKLFVVLEH--MS---PVRSFQWDPQQPR-LAICT-G--G--SK---VYLWS
   WD10  405-443    -CVS-VQVPGEG--DF---PVLGLCWHLSGDS-LALLS-K--D--HF---CLCFL

   WD40 Template    TGEC-LRTLSGH--TS---GVTSVSFSPDGKR-LVSGS-E--D--GT---IKVWD