Input parameters:

  Query = ENSMUSP00000029991 (Len=179)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029991, Len=179):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNEASYQTELCNHFDQEEIRRLGKSFRKLDLDKSGSLSIEEFMRLPELQQNPLVGRVIDIFDTDGNGEVDFHEFIVGTS 80  
WD40-rpts      (____________________________________________________________________WD 1_______

Query       81 QFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDWQLQQLVDKSILVLDKDGDGRISFEEFSDVVKTM 160 
WD40-rpts      ____________________________________________________________)                   

Query      161 EIHKKLVVFVEHGQEDLKA 179 
WD40-rpts                         

1 WD40-repeats found in QUERY=ENSMUSP00000029991 (Len=179):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-141      3.34  252.56  0.02431       27.5%     -2.88

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-141    MGNEASYQTELCNHFDQEEIRRLGKSFRKLDLDKSGSLSIEEFMRLPELQQNPLVGRVIDIFDTDGNGEVDFHEFIVGTSQFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDWQLQQLVDKSILVLD

   WD40 Template    TGECLR-------TLS-------------------GHTS-----GVTSVSFS-----------PDGKRLVS--------------GS---------------EDGTIK---------------VW---------------D