Input parameters:

  Query = ENSMUSP00000029910 (Len=920)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029910, Len=920):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFTRKRQREQQLQLYSKERFSLLLLNLEEYYFEQHTAFHVQHQGSQEERKIRGSLKICSKSVIFEPDAISQPILKIPLR 80  
WD40-rpts                                                                                      

Query       81 DCLKIGKHGENGANKHFAKAKSWGISLIFSQIYFIKEHNIVAPYKIERGKMEYVFELEVSGKVEDVVETLLQLHRASCLD 160 
WD40-rpts                                                                                      

Query      161 KLGDQMAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPGHVCITDTSLYFQPLNGYPKPVVQITLQDV 240 
WD40-rpts                                                                                      

Query      241 RRIYKRRHGLMPLGLEVFCTDDDLCSDIYLKFYEPQDRDDLYFYIATYLEHHAAEHTAESYMLQWQRGHLSNYQYLLHLN 320 
WD40-rpts                                                                                      

Query      321 NLADRSCNDLSQYPVFPWIISDYSSPELDLSNPATFRDLSKPVGALNAERLERLLTRYQEMPEPRFMYGSHYSSPGYVLF 400 
WD40-rpts                                                                                      

Query      401 YLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYDEDVSFLVNSLKLDLGKRQGGQMVDDVDLP 480 
WD40-rpts                                                                                      

Query      481 AWASSPQDFLQKNKDALESGYVSEHLHEWIDLIFGYKQKGSEAIGAHNVFHPLTYEGGVDLNSIEDPDEKVAMLTQILEF 560 
WD40-rpts                                                                                      

Query      561 GQTPKQLFVTPHPRRITPKFKSLSQASSYNASLTDSPVSPGEESFEDLTEESRTLAWSNIAKLQLHEQYKIHKEAVTGIA 640 
WD40-rpts                                                                                      

Query      641 VSCNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDTTVISSSWDNNVYFYSIAFGRRQDTLMGHDDAV 720 
WD40-rpts                              (_________________WD 1________________)   (_____________

Query      721 SKICWHNDRLYSGSWDSTVKVWSGVPAEMPGTKRHQFDLLAELEHDVSVNTINLNAVSTLLVSGTKEGMVNIWDLTTATL 800 
WD40-rpts      ___WD 2_______________)(_______________________WD 3______________________)   (__

Query      801 LHQTSCHSGTVCDAAFSPDSRHILSTGVDGCLNVIDVQTGMLISSMASEEPQRCFVWDGNSVLSGSRSGELLVWDLLGAK 880 
WD40-rpts      _______________WD 4________________)(_________________WD 5________________)   (_

Query      881 VSERIQGHTGAVTCMWMNEQCSSIITGGEDRQIMFWKLQY 920 
WD40-rpts      ________________WD 6________________)   

6 WD40-repeats found in QUERY=ENSMUSP00000029910 (Len=920):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 18   665-703      4.28  291.34  0.00736       17.5%     53.32
  WD 2:  Seg 22   707-743      5.98  361.63  0.00083       42.5%     55.05
  WD 3:  Seg 26   744-794      5.09  324.92  0.00260       25.0%     47.24
  WD 4:  Seg 29   798-836      5.77  352.81  0.00109       32.5%     57.81
  WD 5:  Seg 33   837-875      3.91  276.28  0.01172       30.0%     35.26
  WD 6:  Seg 37   879-917      6.18  370.04  0.00064       25.0%     53.42

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  665-703    -KML-----------QRSISFSNMALSSCLLLPGDTTVISSSWDNNVYFYS
   WD 2  707-743    -GRR-----------QDTLMGHDDAVSKICWHND--RLYSGSWDSTVKVWS
   WD 3  744-794    GVPAEMPGTKRHQFDLLAELEHDVSVNTINLNAVSTLLVSGTKEGMVNIWD
   WD 4  798-836    -ATL-----------LHQTSCHSGTVCDAAFSPDSRHILSTGVDGCLNVID
   WD 5  837-875    -VQT-----------GMLISSMASEEPQRCFVWDGNSVLSGSRSGELLVWD
   WD 6  879-917    -AKV-----------SERIQGHTGAVTCMWMNEQCSSIITGGEDRQIMFWK

   WD40 Template    TGEC-----------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD