Input parameters:

  Query = ENSMUSP00000029730 (Len=900)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029730, Len=900):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASGLPRFLQALPAEHGPEPLRTRVQEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLI 80  
WD40-rpts                                                                                      

Query       81 YLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEICLKDASFLKSF 160 
WD40-rpts                                                                                      

Query      161 SWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESKS 240 
WD40-rpts                                                                                      

Query      241 ASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHPY 320 
WD40-rpts                                                                                      

Query      321 LFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAI 400 
WD40-rpts                                                                 (____________________

Query      401 KNFGNQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASK 480 
WD40-rpts      _____WD 1_________________________)                                             

Query      481 LQLTNMVIEGGHFTPGAQKPSAEADFQLSEILKFGLDKLLSSEGSSMEDIDLKSILGETKDGQWTPDALPAAAAAGGGSL 560 
WD40-rpts                                                                                      

Query      561 EPEEGSELESRSYENHMYLFEGRDYSKEPSKEDRKSFEQLVNLQKTLLEKTSHGGRTLRNKGSVLIPGLAEGPIKRKKIL 640 
WD40-rpts                                                                                      

Query      641 SPEELEDRRKKRQEAAAKRKRLMEEKRKEKEEAEHRKKMAWWESNGYQSFCLSSEDSELEDLEGGDESSAELAYEDLDST 720 
WD40-rpts                                                                                      

Query      721 SINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEVRSAEPRKIYELAGKMEDLSLGDVLLFPIDDKESRDKGQ 800 
WD40-rpts                                                                                      

Query      801 DLLALVVAQHRDRTNVLSGIKMAALEEGLKKIFLAAKKKKASVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTYIYYF 880 
WD40-rpts                                                                                      

Query      881 PRSKARHSQPASSSSAPLVP 900 
WD40-rpts                          

1 WD40-repeats found in QUERY=ENSMUSP00000029730 (Len=900):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   380-435      2.96  237.07  0.03903       20.0%     23.67

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  380-435    RGYSYERVDGSVRGEERHLAIKNFGNQPIFVFLLSTRAGGVGMNLTAADTVIFVDS

   WD40 Template    TGECLRTLSGHTS----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD