Input parameters:

  Query = ENSMUSP00000029464 (Len=353)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029464, Len=353):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLLCLADFKAQAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDTRTTIQGQEINAPICISPTAF 80  
WD40-rpts                                                                                      

Query       81 HSIAWADGEKSTAKAAQKANICYVISSYASYTVEDIVAAAPGGLHWFQLYVQPDWDINKQMVQRIEALGFKALVVTVDAP 160 
WD40-rpts                                                                                      

Query      161 VLGNRRGNKRSLLDLEANIKLKDLRSPGESKSGLPTPLSMPSSSSCWNDLPLLQSMTRLPIILKGILTKEDAELAVKHNI 240 
WD40-rpts                                                             (________________________

Query      241 RGIIVSNHGGRQLDEVPASIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEV 320 
WD40-rpts      _____________WD 1_____________________________________)                         

Query      321 LDILKEELHTCMALSGCRSVAEISPDLIQFSRL 353 
WD40-rpts                                       

1 WD40-repeats found in QUERY=ENSMUSP00000029464 (Len=353):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   216-295      3.36  253.64  0.02352       17.5%      7.13

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  216-295    MTRLPIILKGILTKEDAELAVKHNIRGIIVSNHGGRQLDEVPASIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALG

   WD40 Template    TGECLRTLSGHTS----------GVTSVSFSPDGKRLVSGS---------------------EDGTIKVW---------D