Input parameters:

  Query = ENSMUSP00000029387 (Len=581)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029387, Len=581):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVLPRESGRNCKVYTFSKDGTLFAWSNGEKVNIINVANKGLLHSFDLPKAVC 80  
WD40-rpts                               (________________WD 1________________)(________________

Query       81 LEFSPNNTVLATWQPYTTSKDGTAGTPNLQLYDMKTGACLKSFIQKKMQNWCPSWSDDEIICARNVNNEVHFFENNNFNT 160 
WD40-rpts      ______WD 2______________________)   (________________WD 3________________)      

Query      161 IANKLHLQKVNDFNLSPGTQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPQAALANKSFFKADKVTMLWNKKATAVLVIAS 240 
WD40-rpts                                                                                      

Query      241 TEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAA 320 
WD40-rpts                           (_________________WD 4_________________)  (________________

Query      321 FYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSLLHKY 400 
WD40-rpts      __WD 5__________________)(_________________WD 6_________________)               

Query      401 DVPSNGELWQVSWQPFLDGIFPAKTIKYQAVPSEVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPHPGSDKPL 480 
WD40-rpts                                                                                      

Query      481 SKTALKNQRKHEAKKAAKQEARSDAAPTPVPQSAPRNTVTQSASGDPEVDKKIKNLKKKLKAIEQLKEQAAAGKQLEKNQ 560 
WD40-rpts                                                                                      

Query      561 LEKIQKETALLQELEDLELGV 581 
WD40-rpts                           

6 WD40-repeats found in QUERY=ENSMUSP00000029387 (Len=581):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-63       3.15  244.68  0.03095       12.5%     46.77
  WD 2:  Seg  6    64-113      4.02  280.59  0.01026       15.0%     43.75
  WD 3:  Seg 10   117-154      3.41  255.68  0.02209       15.0%     46.27
  WD 4:  Seg 23   262-301      4.65  306.67  0.00458       10.0%     52.54
  WD 5:  Seg 27   304-345      4.57  303.47  0.00505       30.0%     43.08
  WD 6:  Seg 31   346-385      4.12  284.87  0.00899       15.0%     45.99

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-63     -TESTVLPRESGRNCKVYTFSKDGTLFAW----------SNGE-KVNIIN
   WD 2   64-113    VANKGLLHSFDLPKAVCLEFSPNNTVLATWQPYTTSKDGTAGTPNLQLYD
   WD 3  117-154    -GACLKSFIQKKMQNWCPSWSDDEIICAR----------NV-NNEVHFFE
   WD 4  262-301    NGESAVVQLPKNGPIYDVVWNSSSTEFCA----------VYGFMPAKATV
   WD 5  304-345    -LKCDPVFDFGTGPRNAAFYSPHGHILVL-------AGFGNLRGQMEVWD
   WD 6  346-385    VKNYKLISKPVASDSTYFAWCPDGEHILT----------ATCAPRLRVNN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS----------GSEDGTIKVWD