Input parameters:

  Query = ENSMUSP00000028696 (Len=432)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000028696, Len=432):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPKKCPETQKSPDVAVLLRSKSRRGPQELEPEAKKLRVQGPVSSRTCESCCLLAELSSLQIPSRSSSIVRDLYQHKLGK 80  
WD40-rpts                (_________________WD 1_________________)      (__________________WD 2_

Query       81 ATWSSLQQGLQKSFLHSLASYQVFRKAAPFDRRTTSLAWHPTHPSTLAVGSKGGDIMIWNFGIKDKPIFLKGIGAGGSIT 160 
WD40-rpts      ________________)   (_________________WD 3_________________)(___________________

Query      161 GLKFNHLNTNQFFASSMEGTTRLQDFKGNILRVYTSSNSCKVWFCSLDVSAKSRVVVTGDNMGHVILLSTDGKELWNLRM 240 
WD40-rpts      _WD 4___________________)   (__________________WD 5_________________)  (________

Query      241 HKKKVAHVALNPCCDWLLATASIDQTVKIWDLRQIKGKDSFLYSLPHRHPVNAACFSPDGARLLTTDQNNEIRVYSASQW 320 
WD40-rpts      _________WD 6_________________)        (________________WD 7_______________)    

Query      321 DSPLNLISHPHRHFQHLTPIKATWHSRHNLIVVGRYPDPNLKSCVPYELRTIDVFDGSSGKMMCQLYDPGYSGITSLNEF 400 
WD40-rpts            (______________________WD 8______________________)   (_________________WD 

Query      401 NPMGDTLASTMGYHILIWSQEEDGSQKDHERL 432 
WD40-rpts      9_________________)             

9 WD40-repeats found in QUERY=ENSMUSP00000028696 (Len=432):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-50       5.57  344.66  0.00141       12.5%      9.64
  WD 2:  Seg  3    57-97       5.72  350.77  0.00117       20.0%     37.19
  WD 3:  Seg  6   101-140      7.90  441.06  7.1e-05       25.0%     57.63
  WD 4:  Seg 10   141-185      7.20  412.14  0.00017       20.0%     58.40
  WD 5:  Seg 14   189-229      6.79  394.99  0.00030       17.5%     55.87
  WD 6:  Seg 18   232-271      8.55  467.83  3.1e-05       35.0%     57.79
  WD 7:  Seg 22   280-316      8.74  475.56  2.4e-05       27.5%     45.87
  WD 8:  Seg 26   327-376      5.81  354.63  0.00103       17.5%     51.05
  WD 9:  Seg 30   380-419      6.26  373.09  0.00058       25.0%     51.07

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-50     KS---------PDVAVL--LRSKSRR--GPQELEP-EAK-KLRVQGPVS--SRTCES
   WD 2   57-97     -L---------SSLQIP--SRSSSIV--RDLYQHK-LGK-ATWSSLQQGLQKSFLHS
   WD 3  101-140    -Y---------QVFRKA--APFDRRT--TSLAWHPTHPS-TLAVGSKGG--DIMIWN
   WD 4  141-185    FG-----IKDKPIFLKG--IGAGGSI--TGLKFNHLNTN-QFFASSMEG--TTRLQD
   WD 5  189-229    -N---------ILRVYT--SSNSCKVWFCSLDVSA-KSR-VVVTGDNMG--HVILLS
   WD 6  232-271    -G---------KELWNL--RMHKKKV--AHVALNP-CCDWLLATASIDQ--TVKIWD
   WD 7  280-316    S------------FLYS--LPHRHPV--NAACFSP-DGA-RLLTTDQNN--EIRVYS
   WD 8  327-376    ISHPHRHFQHLTPIKAT--WHSRHNL--IVVGRYP-DPN-LKSCVPYEL-RTIDVFD
   WD 9  380-419    -G---------KMMCQLYDPGYSGIT--SLNEFNP-MGD-TLASTM-GY--HILIWS

   WD40 Template    TG---------ECLRTL--SGHTSGV--TSVSFSP-DGK-RLVSGSEDG--TIKVWD