Input parameters:

  Query = ENSMUSP00000028536 (Len=276)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000028536, Len=276):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPCSVGVQLRTTHDCHKTFYTRHTGFKTLKELSSNDMLLLQLRTGMTLSGNNTICLHHVKIYIDRFEDLQKSCCDPFNI 80  
WD40-rpts                  (________________________________________________WD 1_______________

Query       81 HKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQIINGSVDVDSDDRQRRKPDSDGRTAKALRSLQFTNPGKQT 160 
WD40-rpts      ________________________________)                                               

Query      161 EFAPEGGKREKRKLTKATSAASDRQIIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPTCGSTKCGAECRCDRKW 240 
WD40-rpts                                                                                      

Query      241 LYEQIEIEGGEIIHNKHAGKAYGLLSPCHPYDILQK 276 
WD40-rpts                                          

1 WD40-repeats found in QUERY=ENSMUSP00000028536 (Len=276):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-113      3.05  240.76  0.03489       27.5%      8.45

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-113    THDCHKTFYTRHTGFKTLKELSSNDMLLLQLRTGMTLSGNNTICLHHVKIYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWK

   WD40 Template    TGECLRTL-SGHTSGV-----TSVS-------------------------FS----------PDG----------KRLVSGSEDGT----------IKVWD