Input parameters:

  Query = ENSMUSP00000027933 (Len=729)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027933, Len=729):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLFNSVLRQPQLGVLRNGWSSHYPLQSLLSGYQCNCNDEHTSYGETGVPVPPFGCTFCTAPSMEHILAVANEEGFVRLYN 80  
WD40-rpts                                    (______________________WD 1______________________)

Query       81 TESQTSKKTCFKEWMAHWNAVFDLAWVPGELKLVTAAGDQTAKFWDVRAGELMGTCKGHQCSLKSVAFPKFQKAVFSTGG 160 
WD40-rpts             (_________________WD 2________________)   (_________________WD 3_________

Query      161 RDGNIMIWDTRCNKKDGFYRQVNQISGAHNTADKQTPSKPKKKQNSKGLAPAVDSQQSVTVVLFQDENTLVSAGAVDGII 240 
WD40-rpts      ________)______________WD 4______________)   (_________________WD 5_____________

Query      241 KVWDLRKNYTAYRQEPIASKSFLYPGTSTRKLGYSSLVLDSTGSTLFANCTDDNIYMFNMTGLKTSPVAVFNGHQNSTFY 320 
WD40-rpts      ___)          (____________________WD 6___________________)     (_______________

Query      321 VKSSLSPDDQFLISGSSDEAAYIWKVSMPWHPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWRLNRGLEEKPGD 400 
WD40-rpts      ___WD 7_________________)    (_________________WD 8_________________)   (_______

Query      401 KHSIVGWTSQKKKEVKACPVTVPSSQSTPAKAPRAKSSPSISSPSSAACTPSCAGDLPLPSSTPTFSVKTTPATTRSSVS 480 
WD40-rpts      ___________WD 9__________________)   (_________________WD10________________)    

Query      481 RRGSISSVSPKPLSSFKMSLRNWVTRTPSSSPPVTPPASETKISSPRKALIPVSQKSSQADACSESRNRVKRRLDSSCLE 560 
WD40-rpts                                                                                      

Query      561 SVKQKCVKSCNCVTELDGQAESLRLDLCCLSGTQEVLSQDSEGPTKSSKTEGAGTSISEPPSPVSPYASEGCGPLPLPLR 640 
WD40-rpts                                                                                      

Query      641 PCGEGSEMVGKENSSPENKNWLLAIAAKRKAENSSPRSPSSQTPSSRRQSGKTSPGPVTITPSSMRKICTYFRRKTQDDF 720 
WD40-rpts                                                                                      

Query      721 CSPEHSTEL 729 
WD40-rpts               

10 WD40-repeats found in QUERY=ENSMUSP00000027933 (Len=729):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    31-80       4.31  292.53  0.00709       20.0%     44.49
  WD 2:  Seg  8    88-126      9.05  488.43  1.6e-05       27.5%     44.97
  WD 3:  Seg 11   130-169      8.61  470.40  2.8e-05       37.5%     54.95
  WD 4:  Seg 14   169-202      3.28  250.17  0.02616       10.0%      8.52
  WD 5:  Seg 16   206-244      8.18  452.42  5.0e-05       32.5%     52.06
  WD 6:  Seg 21   255-299      7.20  411.90  0.00017       17.5%     44.31
  WD 7:  Seg 24   305-345      7.87  439.74  7.4e-05       32.5%     51.04
  WD 8:  Seg 28   350-389      8.18  452.57  4.9e-05       35.0%     46.52
  WD 9:  Seg 32   393-434      5.45  339.79  0.00164       15.0%     11.90
  WD10:  Seg 35   438-476      4.16  286.57  0.00853       10.0%     -11.35

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-80     -GYQCNC-----NDEHTSYGETGVPVPPFGCTF--CTAP-SMEH--ILAVANEEGFVRLYN
   WD 2   88-126    -KTCFKE-----WMAHWNAVFD----------L--AWVP-GELK---LVTAAGDQTAKFWD
   WD 3  130-169    -GELMGT-----CKGHQCSLKS----------V--AFPK-FQKA--VFSTGGRDGNIMIWD
   WD 4  169-202    -DTRCNK-----KDGFYRQVNQ----------I--SGAH-N--------TADKQTPSKPKK
   WD 5  206-244    -SKGLAP-----AVDSQQSVTV----------V--LFQD-ENTL---VSAGAVDGIIKVWD
   WD 6  255-299    EPIASKSFLYPGTSTRKLGYSS----------L--VLDS-TGST---LFANCTDDNIYMFN
   WD 7  305-345    -TSPVAV-----FNGHQNSTFY----------VKSSLSP-DDQF---LISGSSDEAAYIWK
   WD 8  350-389    -WHPPTV-----LLGHSQEVTS----------V--CWCPSDFTK---IATCSDDNTLKIWR
   WD 9  393-434    -GLEEKP-----GDKHSIVGWT----------S--QKKK-EVKACPVTVPSSQSTPAKAPR
   WD10  438-476    -SPSISS-----PSSAACTPSC----------A--GDLP-LPSS---TPTFSVKTTPATTR

   WD40 Template    TGECLRT-----LSGHTSGVTS----------V--SFSP-DGKR---LVSGSEDGTIKVWD