Input parameters:

  Query = ENSMUSP00000027856 (Len=876)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027856, Len=876):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARSGSCPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNP 80  
WD40-rpts                                              (_________________WD 1________________) 

Query       81 YSRKVLTTIRSGHRANIFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSC 160 
WD40-rpts        (__________________WD 2__________________)(____________________WD 3___________

Query      161 GEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPVPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGM 240 
WD40-rpts      _________)          (_________________WD 4_________________)                    

Query      241 VARFIPSHLSNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTG 320 
WD40-rpts          (________________WD 5_______________)     (__________________________WD 6___

Query      321 PRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRPRPRGGTNQPDVSTLPTVPSSPNLEVCETAMD 400 
WD40-rpts      ______________________)                       (_________________WD 7____________

Query      401 VDMPAALLQPSTSSTDPVQAQAATAAIESPRSSSLLSCPDSEPRQSVEASGHHAHHQSDNSNERLSPKPGTGEPVLSLHY 480 
WD40-rpts      ____)    (_________________WD 8________________)             (_________________W

Query      481 STEGTTTSTIKLNFTDEWSSTASSSRGNGSHCKSEGQEECLVPPSSVQPPEGDSETRAPEELSEKGTLPENLTQNQIDTA 560 
WD40-rpts      D 9________________)                                                            

Query      561 QLDNFPAEPLDSNSGEKNNPSQDSPCGLPEEGTLSETDRETCEQASTESATRHASTKPELPSQTEAIEQASTESATRHTS 640 
WD40-rpts                                                                                      

Query      641 ANPELPSQTEAIAPLAHEDPSARDSALQDTDDSDDDPVLIPGARYRTGPGDRRSAVARIQEFFRRRKERKEMEELDTLNI 720 
WD40-rpts                                                                                      

Query      721 RRPLVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYD 800 
WD40-rpts        (__________________WD10_________________)   (_________________WD11____________

Query      801 IKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADRLEGDRSEGSGQENENEDEE 876 
WD40-rpts      ____)                                                                       

11 WD40-repeats found in QUERY=ENSMUSP00000027856 (Len=876):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    41-79       9.06  488.74  1.6e-05       22.5%     49.30
  WD 2:  Seg  6    83-124      6.93  401.04  0.00024       40.0%     53.98
  WD 3:  Seg 10   125-170      6.26  373.29  0.00058       25.0%     47.69
  WD 4:  Seg 14   181-220      6.24  372.42  0.00060       22.5%     46.62
  WD 5:  Seg 18   245-281      7.87  439.74  7.4e-05       25.0%     43.07
  WD 6:  Seg 21   287-343      4.32  293.09  0.00697       17.5%     16.72
  WD 7:  Seg 26   367-405      6.56  385.62  0.00040       10.0%      9.60
  WD 8:  Seg 27   410-448      4.50  300.35  0.00557       15.0%     14.07
  WD 9:  Seg 29   462-500      7.14  409.54  0.00019       20.0%     29.90
  WD10:  Seg 35   723-763      6.46  381.62  0.00045       25.0%     46.95
  WD11:  Seg 39   767-805      8.42  462.58  3.6e-05       27.5%     53.19

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-79     -LKLEAT-----L-NVHDG------------------CVNTICWN--D--T-GEYILSGSDDTKLVISN
   WD 2   83-124    -RKVLTT-----IRSGHRA------------------NIFSAKFL--PCTD-DKQIVSCSGDGVIFYTN
   WD 3  125-170    IEQDAETNRQCQF-TCHYG------------------TTYEIMTV--P-ND-PYTFLSCGEDGTVRWFD
   WD 4  181-220    -DCKDDI-----L-INCRR------------------AATSVAIC--P--PVPYYLAVGCSDSSVRIYD
   WD 5  245-281    ---IPSH-----L-SNKSC------------------RVTSLCYS--E--D-GQEILVSYSSDYIYLFD
   WD 6  287-343    -ARELKT-----P-SAEERREELRQPPVKRLRLRGDWSDTGPRAR--P--E-SERERDGEQSPNVSLMQ
   WD 7  367-405    -GRPRPR-----G-GTNQP------------------DVSTLPTV--P--S-SPNLEVCETAMDVDMPA
   WD 8  410-448    -PSTSST-----D-PVQAQ------------------AATAAIES--P--R-SSSLLSCPDSEPRQSVE
   WD 9  462-500    -NERLSP-----K-PGTGE------------------PVLSLHYS--T--E-GTTTSTIKLNFTDEWSS
   WD10  723-763    -PLVKMV-----Y-KGHRN------------------SRTMIKEANFW--G-ANFVMSGSDCGHIFIWD
   WD11  767-805    -AEHLML-----L-EADNH------------------VVNCLQPH--P--F-DPILASSGIDYDIKIWS

   WD40 Template    TGECLRT-----L-SGHTS------------------GVTSVSFS--P--D-GKRLVSGSEDGTIKVWD