Input parameters:

  Query = ENSMUSP00000027833 (Len=1233)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027833, Len=1233):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNY 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW 240 
WD40-rpts      __)                               (_________________WD 5________________)(______

Query      241 EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLE 320 
WD40-rpts      _____________WD 6___________________)(__________________WD 7_________________)  

Query      321 RERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDA 400 
WD40-rpts                               (____________________WD 8___________________)          

Query      401 DSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEITKKIQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK 480 
WD40-rpts                                                                                  (___

Query      481 RTLASVKISKVKYVIWSADMSHVALLAKHEHSCPLPLTAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKY 560 
WD40-rpts      ______________WD 9_________________)                                            

Query      561 AVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQK 640 
WD40-rpts                                                                                      

Query      641 KGYPEVALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITG 720 
WD40-rpts                                                                                      

Query      721 NLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLSAATHGLDEEAESLKETFDPEKETIPDIDPN 800 
WD40-rpts                                                                                      

Query      801 AKLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFVEAPEGLGEDVLG 880 
WD40-rpts                                                                                      

Query      881 KGQEEGGGWDVEEDLELPPELDVPSGVSGSAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQ 960 
WD40-rpts                                                                                      

Query      961 FGPYKQLFLQTYARGRTTYQALPCLPSMYSYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRS 1040
WD40-rpts                                                                                      

Query     1041 ILLSVPLLVVDNKQEIAEAQQLITICREYIVGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNL 1120
WD40-rpts                                                                                      

Query     1121 FFKLKNFKTAATFARRLLELGPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGAC 1200
WD40-rpts                                                                                      

Query     1201 YSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1233
WD40-rpts                                       

9 WD40-repeats found in QUERY=ENSMUSP00000027833 (Len=1233):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.04  322.81  0.00278       22.5%     46.39
  WD 2:  Seg  4    41-79       7.06  406.23  0.00021       27.5%     56.84
  WD 3:  Seg  8    83-121      8.19  452.91  4.9e-05       35.0%     55.52
  WD 4:  Seg 12   125-163      8.74  475.52  2.4e-05       37.5%     56.01
  WD 5:  Seg 19   195-233      8.51  466.31  3.2e-05       32.5%     56.56
  WD 6:  Seg 23   234-277      8.23  454.79  4.6e-05       37.5%     50.90
  WD 7:  Seg 27   278-318      3.08  241.75  0.03384       15.0%     57.69
  WD 8:  Seg 34   346-390      3.04  240.18  0.03551       12.5%     39.05
  WD 9:  Seg 45   477-516      4.26  290.55  0.00754       15.0%     33.55

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     --------M----LTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWD
   WD 2   41-79     -CT-----L----IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWN
   WD 3   83-121    -RR-----C----LFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWN
   WD 4  125-163    -RT-----C----VCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWD
   WD 5  195-233    -AV-----V----KHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWR
   WD 6  234-277    MNE-----SKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWD
   WD 7  278-318    MSK---RTG----VQTFRRDHDRFWVLAAHPNLNLFAAGH-DGGMIVFK
   WD 8  346-390    FNSSKDVAV----MQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENST
   WD 9  477-516    VQQ-----K----RTLASVKISKVKYVIWSADMSHVALLAKHEHSCPLP

   WD40 Template    TGE-----C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD