Input parameters:

  Query = ENSMUSP00000027700 (Len=538)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027700, Len=538):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHK 80  
WD40-rpts                (__________________WD 1__________________)   (_________________WD 2___

Query       81 LVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFD 160 
WD40-rpts      _____________)   (_________________WD 3_________________)   (_________________WD

Query      161 RRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE 240 
WD40-rpts       4________________)(_____________________WD 5____________________)(_____________

Query      241 PMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSI 320 
WD40-rpts      ___________WD 6________________________)   (_________________WD 7_______________

Query      321 WAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALL 400 
WD40-rpts      _)                                        (_________________WD 8________________

Query      401 YLPIAPEVEDPEENPYGPPPDAVPSSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSK 480 
WD40-rpts      )   (_________________WD 9________________)                                     

Query      481 KKQAGRPKGSKGKEKDSPFKPKLYKGDRGLPLEGSTKGKVQAELSQSLAAGGAISELL 538 
WD40-rpts                                                                

9 WD40-repeats found in QUERY=ENSMUSP00000027700 (Len=538):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-52       7.30  416.39  0.00015       27.5%     45.43
  WD 2:  Seg  5    56-94       9.81  519.84  6.1e-06       35.0%     53.66
  WD 3:  Seg  9    98-137      5.88  357.45  0.00095       20.0%     51.10
  WD 4:  Seg 13   141-179      8.37  460.34  3.9e-05       17.5%     56.63
  WD 5:  Seg 17   180-226      8.32  458.32  4.1e-05       25.0%     47.63
  WD 6:  Seg 21   227-280      4.86  315.48  0.00348       25.0%     48.79
  WD 7:  Seg 25   284-322      6.37  377.66  0.00051       22.5%     53.93
  WD 8:  Seg 32   363-401      4.00  279.80  0.01051       15.0%     21.72
  WD 9:  Seg 35   405-443      6.46  381.66  0.00045       10.0%     -30.59

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-52     -QN-------YPE-------------EADGTLDCISM-ALTCTFNRWG--TLLAVGC-N-DGRIVIWD
   WD 2   56-94     -RG-------IAK-------------IISAHI---HP-VCSLCWSRDG--HKLVSAS-T-DNIVSQWD
   WD 3   98-137    -GD-------CDQ-------------RFRFP----SP-ILKVQYHPRDQNKVLVCPM-K-SAPVMLTL
   WD 4  141-179    -KH-------VVL-------------PVDDDS---DL-NVVASFDRRG--EYIYTGN-A-KGKILVLK
   WD 5  180-226    TDSQDLVASFRVT-------------TGTSNT---TA-IKSIEFARKG--SCFLINT-A-DRIIRVYD
   WD 6  227-280    GRE-------ILTCGRDGEPEPMQKLQDLVNR---TP-WKKCCFSGDG--EYIVAGSAR-QHALYIWE
   WD 7  284-322    -GN-------LVK-------------ILHGTR---GELLLDVAWHPVR--PIIASIS---SGVVSIWA
   WD 8  363-401    --E-------QTG-------------ADAAED---EE-VDVTSVDPIA--AFCSSDE-ELEDSKALLY
   WD 9  405-443    -AP-------EVE-------------DPEENP---YG-PPPDAVPSSL--MDEGASS-E-KKRQSSAD

   WD40 Template    TGE-------CLR-------------TLSGHT---SG-VTSVSFSPDG--KRLVSGS-E-DGTIKVWD