Input parameters:

  Query = ENSMUSP00000027139 (Len=830)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027139, Len=830):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEEGVRVVRCGGSRLNFRRAVFSVDSKYIFCVSGDFVKVYSTTTEECVHILHGHTDLVSGILVNPSNHLQLYSCSFDGT 80  
WD40-rpts         (_________________WD 1________________)   (_________________WD 2_____________

Query       81 IKLWDYVDGILIKTFTIGPKLHAFFIPLHAEDSVFLTISKEEPDIFQLVSVKLPKSTSQDVEARQLTFVLDYINRSPKCI 160 
WD40-rpts      ____)(___________________WD 3__________________)               (________________

Query      161 AFGNEGEYVAAVRDFYLSVYFFKKKKTCNFTLPSTKNKKNAKNKFTCVACHPKEDCIASGHMDGKIRLWRNFHSDQKYTY 240 
WD40-rpts      WD 4________________)          (_________________WD 5________________)      (___

Query      241 TCLHWHHDMVMDLAFTVTGTSLLSGGRECVLVEWRDGSEKNKEFLPRLGSSIEHISVSPAGDLFCTSHSDNKITVIHRNL 320 
WD40-rpts      ______________WD 6________________)   (_________________WD 7________________)   

Query      321 DASAVIQGLVKDRSISTGLMVDPRTKALVLNGKPGHLQFYSLQGDKQLYNLDIIQQEYINDEGLTQTELTKAAFGCSGTW 400 
WD40-rpts        (_________________WD 8________________)                (____________________WD

Query      401 LATVEQRQENENELELQMKLWNYSKKTQGFVLNTKIAMPHDDHITALCFNNAESYEKPILVTASRDGHFKVWILTDDSDI 480 
WD40-rpts       9___________________)          (__________________WD10_________________)       

Query      481 YKKAIAWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSQTWELKCTFCQRAGKIRHLCFGRLTCSKYLLGTTD 560 
WD40-rpts            (________________WD11________________)   (__________________WD12__________

Query      561 NGILCCWNLLSCSIQWSAKLNVRVMEPDPYSDHVAAVAQSSAGSDLFVFKPSEPRPLYIQKNVSREEVQWGVFVPRDVPE 640 
WD40-rpts      _______)            (_________________WD13________________)                     

Query      641 SFTSETHQWLNRSQFYFLTKSQSLLTFSTKSPEEKLTPTSKQLLAEESLPTTPFSFILGKHRQQQGAKLTETSENELVQL 720 
WD40-rpts                   (__________________________WD14__________________________)         

Query      721 PLTENIPAITELLHTPAHVLPSASFLCSLFVNSLLLSKETKSAEEVPDDVDMEGNKESDDSDEEYDLTEKDKETNNNTDL 800 
WD40-rpts                                                                                      

Query      801 GEDAIHQLSKSEEKELRKFRKVDYSWLTAL 830 
WD40-rpts                                    

14 WD40-repeats found in QUERY=ENSMUSP00000027139 (Len=830):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-42       6.53  384.36  0.00041       25.0%     58.64
  WD 2:  Seg  5    46-85       8.90  482.30  2.0e-05       45.0%     59.37
  WD 3:  Seg  9    86-128      5.07  324.12  0.00266        5.0%     54.03
  WD 4:  Seg 13   144-181      5.16  328.00  0.00236       12.5%     52.77
  WD 5:  Seg 18   192-230      8.02  445.84  6.1e-05       22.5%     46.03
  WD 6:  Seg 21   237-275      7.93  442.36  6.8e-05       22.5%     53.78
  WD 7:  Seg 25   279-317      7.78  436.01  8.3e-05       22.5%     52.38
  WD 8:  Seg 29   323-361      7.43  421.55  0.00013       20.0%     51.59
  WD 9:  Seg 34   378-422      5.29  333.06  0.00202       15.0%     46.42
  WD10:  Seg 38   433-473      6.52  383.89  0.00042       30.0%     46.48
  WD11:  Seg 41   487-524      5.78  353.54  0.00107       30.0%     53.60
  WD12:  Seg 45   528-568      6.62  388.18  0.00037       17.5%     56.81
  WD13:  Seg 50   581-619      4.71  309.04  0.00425       12.5%     52.86
  WD14:  Seg 56   654-711      3.15  244.68  0.03095       17.5%      5.54

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-42     EG------------------V---RVVRCGGSRLNFRRAVF----S--VDSK-YIFCVSG--------D-FVKVYS
   WD 2   46-85     -E------------------E---CVHILHGHTDLVSGILV----N--PSNHLQLYSCSF--------DGTIKLWD
   WD 3   86-128    YV------------------DGILIKTFTIGPKLHAFFIPL----H--AEDS-VFLTISK--------EEPDIFQL
   WD 4  144-181    -R------------------Q---LTFVLDYINRSPKCIAF----G--NEGE-YVAAVR---------DFYLSVYF
   WD 5  192-230    -L------------------P---STKNKKNAKNKFTCVAC----H--PKED-CIASGHM--------DGKIRLWR
   WD 6  237-275    -K------------------Y---TYTCLHWHHDMVMDLAF----T--VTGT-SLLSGGR--------ECVLVEWR
   WD 7  279-317    -E------------------K---NKEFLPRLGSSIEHISV----S--PAGD-LFCTSHS--------DNKITVIH
   WD 8  323-361    -S------------------A---VIQGLVKDRSISTGLMV----D--PRTK-ALVLNGK--------PGHLQFYS
   WD 9  378-422    ------------------------YINDEGLTQTELTKAAF----G--CSGT-WLATVEQRQENENELELQMKLWN
   WD10  433-473    N------------------------TKIAMPHDDHITALCFNNAES--YEKP-ILVTASR--------DGHFKVWI
   WD11  487-524    -W------------------T---CDFVGSYHKYQATNCCF----S--EDGS-LLAV-SF--------EEIVTIWD
   WD12  528-568    -W------------------E---LKCTFCQRAGKIRHLCF----GRLTCSK-YLLGTTD--------NGILCCWN
   WD13  581-619    -N------------------V---RVMEPDPYSDHVAAVAQ----S--SAGS-DLFVFKP--------SEPRPLYI
   WD14  654-711    QFYFLTKSQSLLTFSTKSPEE---KLTPTSKQLLAEESLPT----T--PFSF-ILGKHRQ--------QQGAKLTE

   WD40 Template    TG------------------E---CLRTLSGHTSGVTSVSF----S--PDGK-RLVSGSE--------DGTIKVWD