Input parameters:

  Query = ENSMUSP00000026816 (Len=371)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000026816, Len=371):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELAEDWLVESLRLYQDFHAFDLSGATRVLEWIGEKGVFVAGYESLKKNEILHLILPLRLSVQENQGLHPERDFKVRHGG 80  
WD40-rpts                                                                    (_________________

Query       81 FSDRSVFDLKHVPDTRLLVTSGLPGCYIQMWQVREDNDVIEAVSTIDVQDKEESLWPRVSVFCSKAPGILHGARLSGLRT 160 
WD40-rpts      _____WD 1______________________)(______________________WD 2_____________________

Query      161 VDVESQKITYSSGTADSESLSCLQVLDANTFAFCGNSGRLGLVDTRQKWAALETVSPGSGCSGERWCAEVRNKGQGPGPC 240 
WD40-rpts      _)(__________________WD 3__________________)   (_____________________WD 4_______

Query      241 IASLGSDGQLCLLDSRNLCHPVSSAQCPVFKPSPDPELLRVTWAPGLDNCLAISGFDGTVQIYDVTSWDGKKTQAEPLFT 320 
WD40-rpts      _____________)          (_________________WD 5_________________)          (_____

Query      321 HKGHIFLDGNDVDSAPLVTTHTWHPRKPRTLLSAASDSSLHVWDWVDLQAS 371 
WD40-rpts      _________________WD 6______________________)       

6 WD40-repeats found in QUERY=ENSMUSP00000026816 (Len=371):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    63-112      3.94  277.35  0.01133       25.0%     39.38
  WD 2:  Seg  9   113-162      4.11  284.25  0.00916       10.0%     34.31
  WD 3:  Seg 13   163-204      4.85  314.93  0.00354       20.0%     49.74
  WD 4:  Seg 17   208-254      4.42  297.26  0.00613       17.5%     30.08
  WD 5:  Seg 20   265-304      6.08  365.75  0.00073       20.0%     43.40
  WD 6:  Seg 23   315-364      4.53  301.68  0.00534       35.0%     54.90

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   63-112    QENQGLHPERDFKVRHGG----------FS----------DRSVFDLKH--VP-D--------TRL-LVTSGLPGCYIQMWQ
   WD 2  113-162    VRE---------DNDVIEAVSTIDVQDKEE----------SLWPRVSVF--CS-K--------APG-IL-HGARLSGLRTVD
   WD 3  163-204    VES---------QKITYS----------SG----------TADSESLSCLQVL-D--------ANT-FA-FCGNSGRLGLVD
   WD 4  208-254    -KW---------AALETV----------SP----------GSGCSGERW--CA-EVRNKGQGPGPC-IA-SLGSDGQLCLLD
   WD 5  265-304    -AQ---------CPVFKP----------SP----------DPELLRVTW--AP-G--------LDNCLA-ISGFDGTVQIYD
   WD 6  315-364    -AE---------PLFTHK----------GHIFLDGNDVDSAPLVTTHTW--HPRK--------PRT-LL-SAASDSSLHVWD

   WD40 Template    TGE---------CLRTLS----------GH----------TSGVTSVSF--SP-D--------GKR-LV-SGSEDGTIKVWD