Input parameters:

  Query = ENSMUSP00000026173 (Len=344)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000026173, Len=344):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPN 80  
WD40-rpts      (________________WD 1_______________)   (____________________WD 2_______________

Query       81 KVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPG 160 
WD40-rpts      _____)(__________________WD 3_________________)(___________________WD 4_________

Query      161 THTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ 240 
WD40-rpts      _________)(___________________WD 5___________________)   (__________________WD 6

Query      241 DASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKF 320 
WD40-rpts      _________________)                                                              

Query      321 LFSPKGECVRDVCAQFLEMTDDKL 344 
WD40-rpts                              

6 WD40-repeats found in QUERY=ENSMUSP00000026173 (Len=344):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.38  336.84  0.00180       17.5%     43.75
  WD 2:  Seg  4    41-86       4.76  311.17  0.00398       15.0%     40.18
  WD 3:  Seg  8    87-127      3.00  238.50  0.03738       12.5%     21.76
  WD 4:  Seg 12   128-170      5.75  352.12  0.00112       12.5%     43.87
  WD 5:  Seg 16   171-214      7.19  411.49  0.00018       22.5%     50.82
  WD 6:  Seg 20   218-258      7.05  406.05  0.00021       17.5%     55.97

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     MN-----LLPCN-PHG--NGLLYAGFNQDHG---CFA-------CGM-ENG-FRVYN
   WD 2   41-86     -L---KEKEKQE-FLE--GGVGHVEMLFRCN---YLALVGGGKKPKYPPNK-VMIWD
   WD 3   87-127    DL---KKKTVIEIEFS--TEVKAVKLRRDRI---VVV-------LDSMIKV-FTFTH
   WD 4  128-170    NP---HQLHVFE-TCY--NPKGLCVLCPNSNNSLLAF-------PGTHTGH-VQLVD
   WD 5  171-214    LASTEKPPVDIP-AHE--GVLSCIALNLQGT---RIA-------TASEKGTLIRIFD
   WD 6  218-258    -G---HLIQELR-RGSQAANIYCINFNQDAS---LIC-------VSSDHGT-VHIFA

   WD40 Template    TG---ECLRTLS-GHT--SGVTSVSFSPDGK---RLV-------SGSEDGT-IKVWD