Input parameters:

  Query = ENSMUSP00000025680 (Len=395)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000025680, Len=395):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWLLLVTSVLSAFGGAHGLFGKLGPKNPEANMNVSQMITYWGYPSEEYEVVTEDGYILGVYRIPYGKKNSENIGKRPVAY 80  
WD40-rpts                                                                                      

Query       81 LQHGLIASATNWITNLPNNSLAFILADAGYDVWLGNSRGNTWSRKNVYYSPDSVEFWAFSFDEMAKYDLPATIDFIVQKT 160 
WD40-rpts                                                                                     (

Query      161 GQEKIHYVGHSQGTTIGFIAFSTNPALAKKIKRFYALAPVATVKYTESPFKKISLIPKFLLKVIFGNKMFMPHNYLDQFL 240 
WD40-rpts      _______________________________________________________________________WD 1_____

Query      241 GTEVCSRELLDLLCSNALFIFCGFDKKNLNVSRFDVYLGHNPAGTSTQDLFHWAQLAKSGKLQAYNWGSPLQNMLHYNQK 320 
WD40-rpts      _________________________________________________________________)              

Query      321 TPPYYDVSAMTVPIAVWNGGHDILADPQDVAMLLPKLPNLLYHKEILPYNHLDFIWAMDAPQEVYNEIVTMMAED 395 
WD40-rpts                                                                                 

1 WD40-repeats found in QUERY=ENSMUSP00000025680 (Len=395):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   160-306      4.10  284.09  0.00921       27.5%      3.95

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  160-306    TGQEKIHYVGHSQGTTIGFIAFSTNPALAKKIKRFYALAPVATVKYTESPFKKISLIPKFLLKVIFGNKMFMPHNYLDQFLGTEVCSRELLDLLCSNALFIFCGFDKKNLNVSRFDVYLGHNPAGTSTQDLFHWAQLAKSGKLQAYN

   WD40 Template    TGECLRTLSGHT-----------SG---------------------VTS-------V------------SFSPD------------G--------------------KRLV------------SGS------------EDGTIKVWD