Input parameters:

  Query = ENSMUSP00000025120 (Len=831)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000025120, Len=831):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSSVLEVSHVFCCPNRVRGALSWNTGPGGLLAFGTSCSVVLYDPQKKVVITNLNGHTARVNCLQWIRTEDGSPSNELVS 80  
WD40-rpts          (_________________WD 1_________________)   (___________________WD 2_________

Query       81 GGSDNRVIHWELENNQVLKSVRLQGHEGPVCAVHAIYQSGPSEGEQHALIASAASDSTVRIWSKKGSEVKYLQTLSFRDG 160 
WD40-rpts      __________)(_______________________WD 3_______________________)     (___________

Query      161 FVLSVCLAILPGTNVPVLACGDDDCRIHLYIQQDDQFQKALSLCGHEDWIRGVEWATFGRDLFLASCSQDCLIRIWRLYM 240 
WD40-rpts      ________WD 4__________________)     (__________________WD 5_________________)(__

Query      241 KPASFETKDGSLRLKENTFTIKDGGVRTTVAVTLETVLAGHENWVNAVHWQPSFYKDGVLQQPVRLLSASMDKTMILWAP 320 
WD40-rpts      ______________WD 6_______________)(____________________WD 7___________________)(

Query      321 DEESGVWLEQVRVGEVGGNTLGFYDCQFGENGTMIIAHAFHGALHLWKQSTVNPRQWAPEIVISGHFDGVQDLMWDPEGE 400 
WD40-rpts      ______________________WD 8_____________________)        (_________________WD 9__

Query      401 FIITTSTDQTTRLFAPWKKKDQKDRSQVTWHEIARPQIHGYNIKCLAMIDRFQFVSGADEKVLRVFSAPRNFVENFSVIS 480 
WD40-rpts      ______________)              (________________WD10________________)(____________

Query      481 RQSLSHMLCDDQDLPEGATVPALGLSNKALFQGDIASQPFEEDELISPAFGSPQVTFQPAVLNEPPTEDHLLQNTLWPEI 560 
WD40-rpts      _________WD11____________________)(_______________WD12_______________)      (___

Query      561 QKLYGHGYEIVCVACNNSKTLLASACKASQKEHAAIILWSTASWKQVQSLAFHTLTVTQMTFSPDDKFLLAVSRDRTWSL 640 
WD40-rpts      ________________WD13___________________)   (_________________WD14_______________

Query      641 WKRQDATSSEFDPFFSLFAFTNKITSVHSRIIWSCDWSPDNKYFFTGSRDKKVVVWGECKSSHNPMEHPIRPCSSILDVG 720 
WD40-rpts      _)                (_________________WD15________________)            (__________

Query      721 SSVTAVSVCPVLNPAQRYIVAIGLESGKICIYSWNKTNQEINDWTSCVETNPSQSHSLGIRRLCWKSCSDDDDDDDDDDT 800 
WD40-rpts      _________WD16___________________)                (_________________________WD17_

Query      801 EQSEEGPEWLHFASCGEDHTVKIYRVNRRAL 831 
WD40-rpts      ________________________)      

17 WD40-repeats found in QUERY=ENSMUSP00000025120 (Len=831):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       6.19  370.20  0.00064       10.0%     52.27
  WD 2:  Seg  5    48-91       6.43  380.12  0.00047       27.5%     55.49
  WD 3:  Seg  9    92-143      5.87  357.24  0.00095       25.0%     52.19
  WD 4:  Seg 13   149-191      5.60  345.84  0.00136       27.5%     54.80
  WD 5:  Seg 17   197-237      6.79  395.22  0.00029       27.5%     52.02
  WD 6:  Seg 21   238-274      4.48  299.57  0.00570       10.0%     18.82
  WD 7:  Seg 24   275-319      6.43  380.39  0.00047       32.5%     49.22
  WD 8:  Seg 28   320-368      7.15  410.07  0.00019       20.0%     57.32
  WD 9:  Seg 32   377-415      7.82  437.89  7.8e-05       25.0%     47.69
  WD10:  Seg 35   430-467      5.01  321.53  0.00289       15.0%     51.40
  WD11:  Seg 39   468-514      4.17  287.00  0.00841       10.0%     29.29
  WD12:  Seg 43   515-550      3.72  268.33  0.01497        5.0%     14.22
  WD13:  Seg 45   557-600      6.14  368.32  0.00068       22.5%     53.23
  WD14:  Seg 49   604-642      9.38  502.00  1.1e-05       37.5%     57.61
  WD15:  Seg 53   659-697      7.28  415.21  0.00016       30.0%     44.38
  WD16:  Seg 56   710-753      4.80  312.79  0.00379       25.0%     47.96
  WD17:  Seg 61   770-825      5.60  346.09  0.00135       17.5%     32.30

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-44     VLE---------VSH----------------VFCCPNRVRGAL--------SWN----T---------GPG--GLLA-FG-----TSCSVVLYD
   WD 2   48-91     -KV---------VIT----------------NLNGHTARVNCL--------QWI----R----TEDGSPSN--ELVS-GG-----SDNRVIHWE
   WD 3   92-143    LEN-----NQVLKSV----------------RLQGHEGPVCAVHAIYQSGPSEG----E---------QHA--LIAS-AA-----SDSTVRIWS
   WD 4  149-191    -VK---------YLQ----------------TLSFRDGFVLSV--------CLAILPGT---------NVP--VLAC-GD-----DDCRIHLYI
   WD 5  197-237    -FQ---------KAL----------------SLCGHEDWIRGV--------EWA----T---------FGRDLFLAS-CS-----QDCLIRIWR
   WD 6  238-274    ------------LYM----------------KPASFETKDGSL--------RLK----E---------NTF--TIKD-GG-----VRTTVAVTL
   WD 7  275-319    -------------ET----------------VLAGHENWVNAV--------HWQ----PSFYKDGVLQQPV--RLLS-AS-----MDKTMILWA
   WD 8  320-368    PDEESGVWLEQVRVG----------------EVGGNTLGFYDC--------QFG----E---------NGT--MIIA-HA-----FHGALHLWK
   WD 9  377-415    -WA---------PEI----------------VISGHFDGVQDL--------MWD----P---------EGE--FIIT-TS-----TDQTTRLFA
   WD10  430-467    -WH---------EIA----------------RPQIHGYNIKCL--------AMI--------------DRF--QFVS-GA-----DEKVLRVFS
   WD11  468-514    APR---NFVENFSVI----------------SRQSLSHMLCDD--------QDL----P---------EGA--TVPALGL-----SNKALFQGD
   WD12  515-550    -------------IA----------------SQPFEEDELISP--------AFG----S---------PQV--TFQP-AV-----LNEPPTEDH
   WD13  557-600    -WP---------EIQ----------------KLYGHGYEIVCV--------ACN----N---------SKT--LLAS-ACKASQKEHAAIILWS
   WD14  604-642    -WK---------QVQ----------------SLAFHTLTVTQM--------TFS----P---------DDK--FLLA-VS-----RDRTWSLWK
   WD15  659-697    -AF---------TNK----------------ITSVHSRIIWSC--------DWS----P---------DNK--YFFT-GS-----RDKKVVVWG
   WD16  710-753    -IR---------PCS----------------SILDVGSSVTAV--------SVC----P----VLNPAQRY--IVAI-GL-----ESGKICIYS
   WD17  770-825    TNP---------SQSHSLGIRRLCWKSCSDDDDDDDDDDTEQS--------EEG----P---------EWL--HFAS-CG-----EDHTVKIYR

   WD40 Template    TGE---------CLR----------------TLSGHTSGVTSV--------SFS----P---------DGK--RLVS-GS-----EDGTIKVWD