Input parameters:

  Query = ENSMUSP00000024983 (Len=1464)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000024983, Len=1464):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALYFDHRIKAPDTPSSPSHITWHPTHPFLAVASISPSSGGNVDIYLEQGEPVPDTHIERSFQATSLCWHPTRLILAIGW 80  
WD40-rpts      (_____________________WD 1____________________)   (_________________WD 2________

Query       81 ETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVSGDKLGVLLLWRLDQRGRVQGTPLLKHEYGKALTHCIFRLP 160 
WD40-rpts      ________)   (_________________WD 3________________)                             

Query      161 PPGEDLVQLAKAAVSGDEKALDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQVASTDSSIQTLFYIE 240 
WD40-rpts                         (_________________WD 4________________)(_________________WD 5

Query      241 RREALVVVTENLLLSLYVVTPEGEAEEVMKVKLSGKTGCRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSLQEKFG 320 
WD40-rpts      _________________)       (_________________WD 6________________)           (____

Query      321 FEKGESINCVCFCKAKGLLAAGTNKGRVAMWKKVPSFPNGRGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSTES 400 
WD40-rpts      ____________WD 7_______________)                 (________________WD 8__________

Query      401 VSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGGTHSLHTDMHISGVFATKDAVAVWNGKQVAIFEPSGSTLRNAGTF 480 
WD40-rpts      _____)                                                                          

Query      481 LCETSVLAMHEESIYTVEPNRLQVRTWQGTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCK 560 
WD40-rpts                                  (_________________WD 9________________)           (_

Query      561 NLAQLVPDVGSITSLRCNANGNKISILLSKVNNSPDSKIYIYDVEMDTVNVFNFTTGQIGQIQTLPFNEPPTNETRSFMD 640 
WD40-rpts      ___________________WD10___________________)                                     

Query      641 KSLAGYTPVNHFWDQSEPRLFVCEALQEAPGAQPQAVDKQPRVEEGTCHKEEVLILSFFASEEHGFLLHDSFPRPSTYQS 720 
WD40-rpts                                                                                      

Query      721 LLGMEVPHYYFTKKPGEADKEDRVDSGYYHIPQMVAKRPLRDFVGLEDCDKSTRDAMLNFSFFVTIGDMDEAFKSIKLIK 800 
WD40-rpts                                                                                      

Query      801 SEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEQEPELEARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKFY 880 
WD40-rpts                                                                                      

Query      881 QASDQWQKAVEVAELHDRVHLRTTYYNYAKHLEASADCGQALSYYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWR 960 
WD40-rpts                                                                                      

Query      961 WWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQYESQDEVKQAVHFYTRAQAF 1040
WD40-rpts                                                                                      

Query     1041 NNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQMDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDE 1120
WD40-rpts                                                                                      

Query     1121 KSDPALLARCSDFCIEHRQFEKAVELLLAAKKYHEALQLCLEQNMTITEDMAEKMTVSKDSKDMSEESRRELLEQIANCC 1200
WD40-rpts                                                                                      

Query     1201 MRQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKEPEIMKSIISFYTKGRAL 1280
WD40-rpts                                                                                      

Query     1281 DLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKTKNPLDQETKLAQLQSKMTLVKRFIQARRTYTEDPKESLRQ 1360
WD40-rpts                                                                                      

Query     1361 CELLLEEPDLDSTIRVGDVYGFLVEHHVQMEEYQMAYKYLEEMRKRLPSANMSYYVDQRTVDTVHQGLGLLPPSRIMPER 1440
WD40-rpts                                                                                      

Query     1441 VRHNSMEDHKEVYEEVIEEVDNDP 1464
WD40-rpts                              

10 WD40-repeats found in QUERY=ENSMUSP00000024983 (Len=1464):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-47       3.54  260.79  0.01888       12.5%     44.49
  WD 2:  Seg  5    51-89       5.72  351.00  0.00116       20.0%     47.49
  WD 3:  Seg  8    93-131      7.08  407.12  0.00020       30.0%     48.99
  WD 4:  Seg 14   180-218      3.29  250.69  0.02575       17.5%     36.81
  WD 5:  Seg 18   219-258      5.79  353.74  0.00106       10.0%     55.03
  WD 6:  Seg 22   266-304      5.01  321.58  0.00288       17.5%     52.37
  WD 7:  Seg 27   316-352      4.31  292.53  0.00709       15.0%     44.72
  WD 8:  Seg 30   370-406      3.60  263.24  0.01751       12.5%     39.47
  WD 9:  Seg 43   509-547      4.57  303.35  0.00507       20.0%     45.43
  WD10:  Seg 47   559-603      3.02  239.56  0.03619       25.0%     31.14

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-47     MALYFDHRIKAPDTPSSPSHITWHPTHPFL------AVASISPSSGGNVDIYL
   WD 2   51-89     -E---PVPDTHIERSFQATSLCWHPTRLIL------AIGW----ETGEVIMFN
   WD 3   93-131    -K---EQHTVPLPHTTDIAILSWSTSGSCL------VSGD----KLGVLLLWR
   WD 4  180-218    -A---LDMFNWRKSSFGSFLKTGSQEGLSF------FVSL----MDGTVHYVD
   WD 5  219-258    EK---GKTAQVASTDSSIQTLFYIERREAL------VVVT----ENLLLSLYV
   WD 6  266-304    -E---EVMKVKLSGKTGCRADITLIEGSLL------VTAI----GEPVLRFWD
   WD 7  316-352    QE------KFGFEKGESINCVCFCKAKGLL------AAGT----NKGRVAMWK
   WD 8  370-406    ------ALQTPTELEGNITQIKWGSRKNLL------AVSS----TESVSILSE
   WD 9  509-547    -G---TVKQLLLFSETEGSPCFLDVCGTFL------VAGT----DLAHFKSFD
   WD10  559-603    -C---KNLAQLVPDVGSITSLRCNANGNKISILLSKVNNS----PDSKIYIYD

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSPDGKRL------VSGS----EDGTIKVWD