Input parameters:

  Query = ENSMUSP00000021703 (Len=1423)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000021703, Len=1423):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASVSDPVTFREFCPLYYLLNAIPTKIQRGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMKKYNVDGKMESIT 80  
WD40-rpts                                                                                      

Query       81 VVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGVHKTSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQ 160 
WD40-rpts                                (______________________WD 1_____________________)     

Query      161 GLCSSHLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKAVKQIGSQPRKSTGKFGACFIPGLCKQSDLTLYAARPGL 240 
WD40-rpts                                                                                      

Query      241 RLWKADVHGTVQATYILKDVFAGGVTPFELYPRLEPSDGGSCISPEKHLGLVSCFFREGWVLSWNEYSIYLLDTVNQATV 320 
WD40-rpts                                                                                      

Query      321 AGLEGLGDIVSVSCTENEIFFLKGDRNIIRISSRPEGIASIVRDGLEMTRCSEQVHGQHLEKSLGATVCETRLRGSSVAS 400 
WD40-rpts                                                                                      

Query      401 SVASEQRSRSSSLNSTDSGSGLLLPGLQAASELGQSGQPSSQRFSVISSEDFDQELIVKPIKVKKRRRKRKTEGGSKSTC 480 
WD40-rpts                                                                                      

Query      481 PSSLESTPCSELPADSPQSLNTDLLSMTSSALGSSMDQLSTESPEQESNLGGEVNGISQENSGPEAFHVLELPGPAPGPA 560 
WD40-rpts                                                                                      

Query      561 STPTDEENCTGKEASQCSHTQDTDLLSGVLTLPLQPEEDVGGADIISGLDEQPGPAADAAVHTEFCLRGQNSSAEEQEAD 640 
WD40-rpts                                                                                      

Query      641 TMEFSDPQSTFSEAPLLDSSMLPSSLSWPPGAEQWLPGIGVYDITTETASPEADILTHVAVPSHLSSNPWHLLTDSNTGQ 720 
WD40-rpts                                                                                      

Query      721 KETPTFQCDMGNVEGQVTPLASASVASTHAHWLDQPFQDQAVTSSDEEDIYAHGLPSSSSETSVTELGAGRSLQDLSQPG 800 
WD40-rpts                                                                                      

Query      801 AEETTLLKADQFAESWMGYSAPGYGILSLAVSEKFLWCLDYKGGLFCSPLPGAGLRWQRFEDAVQQMAVSPSGALLWKIE 880 
WD40-rpts                                                                                      

Query      881 QKSNRAFACGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTNGDLYLQTGLSVDRPCARAVKVDCPYPLSQIAARNSVV 960 
WD40-rpts                                                                                      

Query      961 WALTEQRALLYREGVSSFCPEGEQWKCDIVSERQTLEPVCITLGDQHTLWALDIHGKLWFRTGVVPKKPQGDDDHWWQVS 1040
WD40-rpts                                                                                      

Query     1041 ITDYVVFDQCSLFQTIMHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSLLGVNKSGVWISSGKNEFHVAKGSLIGT 1120
WD40-rpts                                                                                      

Query     1121 YWNTVVPRGTASATKWAFVLASPAPTQDGSSLWLCQSSKDLCIISAQNVQCRPSTVQLPPDAEMRTYAACQDALWALDSL 1200
WD40-rpts                                                                                      

Query     1201 GQVFIRTLSKSCPTGMHWTKLDLSQLGTVRLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEPPVQLAGV 1280
WD40-rpts                                                                                      

Query     1281 TLVSVHSSPNDQMLWALDSRWNVHVRTGITEEMPVGTDWEHVPGLQACQLALSTRTVWARCPNGDLARRYGITDKNPAGD 1360
WD40-rpts                                                                                      

Query     1361 YWKKIPGSVSCFTVTSSDELWAVGSSGCLLQRLTKTFSHSHNPQNSQVASSHPEELEEEWEVI 1423
WD40-rpts                                                                     

1 WD40-repeats found in QUERY=ENSMUSP00000021703 (Len=1423):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   107-155      3.81  271.87  0.01342       25.0%     49.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  107-155    VSSLPGRNKQLRRFDVTGVHKTSITALAWSPNGMKLFSGDDKGKIVYSS

   WD40 Template    TGEC---------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD