Input parameters:

  Query = ENSMUSP00000020568 (Len=722)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000020568, Len=722):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFCLTELHLWSLKSTLHIADRDIGVYQYYDKKDPSVSATEHGNLEEKQRLAESRDYPWTLKNRRPEKLRDSLKELEELM 80  
WD40-rpts                                                                                      

Query       81 QSSPCVLSKWKSKYICQLLFGSGVLVSLSLSGPQLEKVVIDRSLVGKLISDTISDALLTDSFIILSFLAQNKLCFIQFTK 160 
WD40-rpts                                                                                      

Query      161 KMDSLDGNKRLEKLSALDLKISYYDIPGPANRTIDRHLAVNSTQDLVVCWWPLVSDDVWPWTPVSSEKDRANMLLLGFTQ 240 
WD40-rpts                                                                                      

Query      241 GGLEVLSFVRTEWSPLDVHFGTKQPYQVFTVECSVSVDKEPMADSCIYESVRNKLHCVSVTRIPLRSKAISCCRNSTEDK 320 
WD40-rpts                                                         (___________________WD 1_____

Query      321 LIVGCEDSSVILYEAHRGVTLLAQAELRPSLISCHPSGAILLVGSNQGELQIFDIALSPINIQLLAEDYSPKETLQFKKF 400 
WD40-rpts      _____________)(_________________WD 2_________________)                          

Query      401 FDVSSSLVQMQWMAPPVVFQKPKRGEICDLLFLRFNKGPLGVLLFKLGILTRGQLGLVDLILQYIHYSEVYEAISILRSM 480 
WD40-rpts                                                                                      

Query      481 DWDTLGQQCLIGMGTIVNHLLRQRLTPEREAQLEASLGTFYAPTRPLLDTTILEYREPVSKYARRLFHHLLRYKRFEKAF 560 
WD40-rpts                                                                                      

Query      561 LLAVDIGARDLFMDIHYLALDMGELALAEVARRRAHDIDVESVSSGVELLGPLDRRDMLNEGFASSALMPEGENKFPGLL 640 
WD40-rpts                                                                                      

Query      641 PSIGSTHMQTLQQKIPNGPSSRWAIERRTEEEEEEEEEEEEELCTDSSGATTWNAEGELKEDQRKQDIGDVGSLRMVHFG 720 
WD40-rpts                                                                                      

Query      721 LV 722 
WD40-rpts        

2 WD40-repeats found in QUERY=ENSMUSP00000020568 (Len=722):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19   292-334      3.37  254.07  0.02321       17.5%     48.85
  WD 2:  Seg 23   335-374      4.06  282.39  0.00970       22.5%     39.73

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  292-334    RNKLHCVSVTRIPLRSKAISCCRNSTEDKLIVGCEDSSVILYE
   WD 2  335-374    AHRG---VTLLAQAELRPSLISCHPSGAILLVGSNQGELQIFD

   WD40 Template    TGEC---LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD