Input parameters:

  Query = ENSDARP00000112500 (Len=1263)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000112500, Len=1263):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 IDDKEFDIPQVDTPPTLESILNEPEDEDEPFILEDTCLLNTENIDAHSCETSSLASSDSGDRTHLKRRRKAVETNATVHG 80  
WD40-rpts                                                                                      

Query       81 SVLRRNVLKGISAQIVSAADKVDAGLPTAITVSSVIAVGTSHGLALVFDQNQALRLCLGTTATGAEYGAVSALSINHDCT 160 
WD40-rpts                                                       (____________________WD 1______

Query      161 RLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDHPALAVCNDSGGSVFELSFRRVMGMRTCESRCLFSGSK 240 
WD40-rpts      ______________)                                                                 

Query      241 GEVCCVEPLHAGTELKDHPITQYSLLAMASLTKILLIGLKPSLKVWMTFPYGKTDPASVPLLAWQFVAAQKAINPVLAFC 320 
WD40-rpts                                                                                      

Query      321 RGDTIHFLLVKKDESGTIHVIKQRQLQLNCDLISLSWINPRTLVLMDSTEKLRVVDRPSQEELETVDMAELQLVYNSSHF 400 
WD40-rpts                                                                                      

Query      401 KSLATGGNVSQALALVGEKTCYQSVCSYAGQIMYLGTKSVHIMTLRNWRERVDYLLKQEKFMEALSLAWSFHEGTAKAVL 480 
WD40-rpts                                                                                      

Query      481 GLFADPAKRKGVVADKMVEILLQYVERSLKKCPEHGKIQVMEQHFQDVVPVMVDYCLLLQRTDLLFNQIYPRLVENSVAR 560 
WD40-rpts                                                                                      

Query      561 GVFLESLEPYILSERIGCLTAPVMRDLLSYFQENGMMDSVEGCLVHMDITNLDIQQVVQMCWDNQLYDAMIYVFNSGMND 640 
WD40-rpts                                                                                      

Query      641 YISPMEKLFQAIGPPLQEGKPLTDEHVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPQVKNQVFEFLIRLHSVEAAQEEE 720 
WD40-rpts                                                                                      

Query      721 VYPYIRTLLHFDTREFLNVLALTFEDFKNDKQALEYQQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVN 800 
WD40-rpts                                                                                      

Query      801 RKLFDQVLEFLCSPDDDSRHTERQQVLLELLQVGGVVQFDEGRLLYLAEKAEFYQICEFMYEKKHLYDKIVDCYLKDPLR 880 
WD40-rpts                                                                                      

Query      881 KEELFNYIHNILSMPGYSAEEKHSVWVKALQHFKDLVRINAAKTAELVAVHFADEVHSIITSLQDNYLVFQFLKCLLDPS 960 
WD40-rpts                                                                                      

Query      961 SREGLNSQTVLKLGPDLHELLVDLLCQFSPQQVIVFLKTSQDYRLEETIQITEKHKLHEATAYLLERKGDVQGAFQVLLQ 1040
WD40-rpts                                                                                      

Query     1041 TLKGKLHKLAMESSDSDKPDVLQRVEEALHDIIALCQRSSSGLQFQQPEALWFPLLEAMMSPQKLLKGADTIHTSEALKE 1120
WD40-rpts                                                                                      

Query     1121 LTMKVLNSMSSFIAPPAIIQRILQDPVYGKGKLAEIQGLILGMLETFNYEQTLLETTTNLLNSDLHWSLSHLRKAVCKGL 1200
WD40-rpts                                                                                      

Query     1201 HPRQDHCNICLQQYKRRQESEEEIVIFRCSCGHLYHCQCLQRKETGVLSERQYPWSCYKCTSN 1263
WD40-rpts                                                                     

1 WD40-repeats found in QUERY=ENSDARP00000112500 (Len=1263):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   130-175      5.47  340.58  0.00160       30.0%     49.71

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  130-175    QNQALRLCLGTTATGAEYGAVSALSINHDCTRLLCGFAKGQITMWD

   WD40 Template    TGECLR------TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD