WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000112164 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000112164 (Len=731) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000112164, Len=731): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTLGQLDKVSLSSCRRVSKHWQSLTEEILTEMEVKKRVKKQAMIFQGNSTSKVNPVYAKICEVLVPISEGDKHFQHGGTS 80
WD40-rpts (___________
Query 81 PRHTQSQGQVLDSLYKGFKTEKIQLEERNVYCGVYNTSVLLEREDGSRVMHYAGGQLVAVGSRDRTIRLLHIGSLKELPL 160
WD40-rpts ______WD 1________________) (_________________WD 2________________) (____
Query 161 VIQGHSGSVRAVLVCEEKDLVISASYDLSIRCWNLKTGMCMMIFHGHFGTINCLDLVGDRLVSGAKDCRVKVWNLQTGKC 240
WD40-rpts _____________WD 3________________) (________________WD 4_______________) (__
Query 241 VENLKFKHPKPIMCVKMSETLVISSCSGGQIRIWSIQTALLIRQISGHQGAVLCLCFDQWHILSGGSDGVVKAWSINSSF 320
WD40-rpts ______________WD 5________________) (________________WD 6_______________) (__
Query 321 KKCLRTFQHPKEVLAMSFLFLRIITGCMDGKIRIFNFLNGDCLRVIKTNMKQCPVLSLHTHHNTVVVNTRGSVLMLQFAE 400
WD40-rpts _______________WD 7________________) (_________________WD 8________________)
Query 401 VQWDYSARAVRDLTEQFHVSPKNVPRSTERATQGGSSGLKSHPHHSKNLSTTNMQHAQVAQRESTRAAMWSKLQAYSHSR 480
WD40-rpts (________________WD 9________________)
Query 481 TSINLQSEFITRPRSVLSAGKPVSGYKGFQNRVSHTPSTATSSSDKKTKNDIKHSVLSRSEKAVRERVRKRGPHHPVTPE 560
WD40-rpts (_________________WD10________________) (_____________
Query 561 RILLRAGSSQQGHNSDPARSNMELNARVRDAWGPDTCRQPSFQTSTKKPSETNTPFTMHSVDLNPQSSLQAHSTSKQSQR 640
WD40-rpts WD11____________) (________________WD12______________
Query 641 SLKVNKIDPLNVTCLEDDKTPQGLLVRQTSMPKHCHEDLEMTTKSSLRHIQLDPYKRSEVFQLRTDTQMEAFLQECTRQQ 720
WD40-rpts __)
Query 721 QVCKNGSEDKR 731
WD40-rpts
 12 WD40-repeats found in QUERY=ENSDARP00000112164 (Len=731): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 69-107 4.69 308.40 0.00434 17.5% 23.65 WD 2: Seg 5 113-151 8.03 446.24 6.0e-05 20.0% 53.70 WD 3: Seg 8 156-194 8.45 463.84 3.5e-05 25.0% 50.10 WD 4: Seg 12 198-234 8.08 448.35 5.6e-05 35.0% 50.96 WD 5: Seg 16 238-275 6.36 377.51 0.00051 25.0% 51.60 WD 6: Seg 20 279-315 7.86 439.17 7.5e-05 32.5% 53.43 WD 7: Seg 24 318-356 7.02 404.82 0.00022 17.5% 41.19 WD 8: Seg 28 360-398 8.45 463.84 3.5e-05 15.0% 53.84 WD 9: Seg 32 413-450 2.87 233.31 0.04377 12.5% 16.96 WD10: Seg 37 500-538 5.25 331.54 0.00212 12.5% 3.59 WD11: Seg 38 547-577 4.20 288.19 0.00811 10.0% 0.88 WD12: Seg 40 606-643 6.54 384.85 0.00040 10.0% 12.55Multiple sequence alignment of 12 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 69-107 -EGDKHFQH-GGTSPRHTQSQGQVLDSLYKGFKTEKIQLEE WD 2 113-151 -GVYNTSVL-LEREDGSRVMHYAGGQLVAVGSRDRTIRLLH WD 3 156-194 -KELPLVIQ-GHSGSVRAVLVCEEKDLVISASYDLSIRCWN WD 4 198-234 -GMCMMIFH-GHFGTINCLDLVGD--RLVSGAKDCRVKVWN WD 5 238-275 -GKCVENLKFKHPKPIMCVKMSET--LVISSCSGGQIRIWS WD 6 279-315 -ALLIRQIS-GHQGAVLCLCF--DQWHILSGGSDGVVKAWS WD 7 318-356 -SSFKKCLR-TFQHPKEVLAMSFLFLRIITGCMDGKIRIFN WD 8 360-398 -GDCLRVIK-TNMKQCPVLSLHTHHNTVVVNTRGSVLMLQF WD 9 413-450 LTEQFHV---SPKNVPRSTERATQGGSSGLKSHPHHSKNLS WD10 500-538 -GKPVSGYK-GFQNRVSHTPSTATSSSDKKTKNDIKHSVLS WD11 547-577 ----------RVRKRGPHHPVTPERILLRAGSSQQGHNSDP WD12 606-643 TKK--PSET-NTPFTMHSVDLNPQSSLQAHSTSKQSQRSLK WD40 Template TGECLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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