Input parameters:

  Query = ENSDARP00000111966 (Len=1483)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000111966, Len=1483):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 RMALSTNLCRVTLGVEGMTCGSCVQSIEGRIGGLPGVIHIQVSLEQNNATVTYDHTQHTPQSIADAIEDMGFESSLTNAT 80  
WD40-rpts                                                                                      

Query       81 STPVQTETKVFSKAGCSADSVQQALSTLAQIKGVIETQESADNQGLAVTFVPSLVSEDQLGEVLKCLAPDTACRPPLSPK 160 
WD40-rpts                                                                                      

Query      161 EGSTSRSFSGVEAVKMRIEGMVCLSCTTTIEGKIGKLKGVEKIKVSLESQEAAVVYLPYIITVDEIVKQIEVAGFKATVK 240 
WD40-rpts                                                                                      

Query      241 SKPRQLKLSASEVERLLSAPKQTEEKLSEPPADSTVTTLFQVTGMHCNSCVVNIQDNISKLPAVTSVVVSLENRQASIQH 320 
WD40-rpts                                                                                      

Query      321 NPKQVSAVELQKAIEALPPGNFKAIIPASPEPGFLQPLVSVAEIHIEGMTCGSCVQSIEGTLSQKKGVRSAQVSLANHKG 400 
WD40-rpts                                                                                      

Query      401 TFEYDPLLTSPEELRAAIEDMGFDAFLPETNSLVPSVVKSPSLSVRSSSLSPVRSAVKENEAESDAEPSTNTISKCFIQI 480 
WD40-rpts                                                                                      

Query      481 GGMTCASCVANIERNLKNEYGIHSVLVALMASKAEVRYSPSVIDPLRIAELIRELGFTATVMDNYDGSDGSLELVVRGMT 560 
WD40-rpts                                                                                      

Query      561 CASCVHKIESNLMKQKGILYASVALSTNKAHIKYDPEVTGPRDIIRLIENMGFTASLVKKDRPGSHLDHSREIRQWKRSF 640 
WD40-rpts                                                                                      

Query      641 QISLFFCVPVMGMMIYMIVVDHMIDKYHQHHNATAEDRAKYHSTMFLEKQLLPGLSIMNLISFLFCVPVQFIGGRYFYCQ 720 
WD40-rpts                                                                                      

Query      721 AYKAVKHRTANMDVLIVLATTIAFTYSVVVLLVAMVERAKVNPITFFDTPPMLFVFISLGRWLEQIAKSKTSEALSKLMS 800 
WD40-rpts                                                                                      

Query      801 LQATEATVVTLNEDMSVLSEEQVDVELVQRGDVVKVVPGGKFPVDGRVIEGHSMADESLITGEAMPVTKKPGSTVIAGSI 880 
WD40-rpts                                                                                      

Query      881 NQNGSLLIKATHVGTDTTLSQIVKLVEEAQTSKAPIQQFADKISSYFVPFIVVISVLTLLAWIIIGFVNFSLVQTYFPGY 960 
WD40-rpts                                                                                      

Query      961 DKSISEAEAVIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKIQSVVFDKTGTITYGAP 1040
WD40-rpts                                                                                      

Query     1041 KVVQVKMLAEGNRLPRSKLLAIVGTAENSSEHPLGAAITKYCKQELGTESLGTCTDFQAVPGCGIRCLVSNTENLLKRED 1120
WD40-rpts                                                                                      

Query     1121 SDSEENQHNAVLIQISDARAHSTEHPLIMDPQPLTVVQTASYTVLIGNREWMRRNALQVRADVDEAMTEHERRGCTAVLV 1200
WD40-rpts                                                                                      

Query     1201 AVDNELCAMVAIADTVKPEAELAVHVLSAMGLEVVLMTGDNSKTARAIAAQVGIRKVFAEVLPSHKVAKVEQLQQEGKRV 1280
WD40-rpts                                   (___________________________________________WD 1___

Query     1281 AMVGDGVNDSPALAMADVGIAIGTGTDVAIEAADVVLIRNDLLDVVGSIDLSKKTVKRIRINFVFALMYNLVGIPIAAGV 1360
WD40-rpts      ________________________________________)                                       

Query     1361 FMPVGLVLQPWMGSAAMALSSVSVVLSSLLLKCYTKPTVEKLKRRLGDVRTHGSLSDVSVHIGMGELRRPSPKLSLLDRF 1440
WD40-rpts                                                                                      

Query     1441 VNYSRASINSLRSDKHSMNSMALSEPDKHSLLVGDDHCDNEIV 1483
WD40-rpts                                                 

1 WD40-repeats found in QUERY=ENSDARP00000111966 (Len=1483):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 39  1230-1321     3.73  268.67  0.01482       22.5%     15.39

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1230-1321   MGLEVVLMTGDNSKTARAIAAQVGIRKVFAEVLPSHKVAKVEQLQQEGKRVAMVGDGVNDSPALAMADVGIAIGTGTDVAIEAADVVLIRND

   WD40 Template    TGECLRTLSGHT-----------------SGVTS----------------VSFSPDGKRL-------VSG---S---------EDGTIKVWD