Input parameters:

  Query = ENSDARP00000111878 (Len=777)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000111878, Len=777):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKLKNKKRHLEENEEEQLPIFDKDSGEDGHLDDGDEDPADLSDSEESVFSGLEDSGSDDEDDDEDDDEDDDDKDGSEEK 80  
WD40-rpts                                                                                      

Query       81 SSDAEEDKADDDDGDLKLSAKDDVKPQVDSQNSKEKKKKKRKGKSVLKDGGEEDVASGRDEALKITSQVDEYDHDTSDEE 160 
WD40-rpts                                                                                      

Query      161 DIRNTVGNIPMEWYKDYPHIGYDLDGKKIFKPIRNKDELDEFLDKMENPDYWRTVQDKMTGADIRLSDEQVDLVHRLQQG 240 
WD40-rpts                                                                                      

Query      241 KFGDVNFNEYEPAVDFFSNEVMIHPVTNRPQDKRSFIPSLIEKEKVGKLVHAIKMGWIKPRRPKETTPQYYDLWAKEDPN 320 
WD40-rpts                                                                                      

Query      321 SILGRHKMHVPAPKMKLPGHEESYNPPPEYLLSEEERLAWAAQDPEDRKLSFLPQKFSCLRAVPAFSRFIHERFERCLDL 400 
WD40-rpts                                                                                      

Query      401 YLCPRQRKMRVNVNPEDLIPKLPKPKDLQPFPTTQSLVYRGHSSLVRSISVSPSGQWLVSGSDDCTVRFWEVSTARCLKT 480 
WD40-rpts                   (__________________________WD 1__________________________)   (_____

Query      481 VQVGGAVKGVAWNPNPSICLVAVSYEDSVLLLNPALGDRLLCTATDQLISSYAEPEEVKEQPVQWLVSEGEGHEQGHRLV 560 
WD40-rpts      ____________WD 2________________)(_________________WD 3_________________)(______

Query      561 LKHPKAVRQVTWHAKGDYLACVLPDSSSSVQVLIHQVSKRRTQNPFRKSKGLVQCVSFHPVRPYFFVATQRYVRVYNLIK 640 
WD40-rpts      ___________WD 4________________)       (________________WD 5________________)   

Query      641 QELTKKLMANCKWISSMAIHPGGDNVICGSYDCRLAWFDLDLSTKPYKVLRHHKKALRSVSFHSHYPLLASGSDDGSVIV 720 
WD40-rpts      (_________________WD 6________________)    (_________________WD 7_______________

Query      721 CHGMVYNDLLQNPLIVPVKVLKGHSITHDLGVLDVTFHPTQPWVFSSGADATIRLYT 777 
WD40-rpts      _)            (___________________WD 8__________________)

8 WD40-repeats found in QUERY=ENSDARP00000111878 (Len=777):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   414-471      8.39  461.22  3.8e-05       47.5%     52.05
  WD 2:  Seg 11   475-513      3.81  271.89  0.01342       22.5%     55.37
  WD 3:  Seg 15   514-553      2.97  237.49  0.03854       12.5%     14.32
  WD 4:  Seg 17   554-592      4.24  289.82  0.00771       20.0%     43.02
  WD 5:  Seg 21   600-637      3.84  273.08  0.01293       15.0%     46.07
  WD 6:  Seg 24   641-679      6.94  401.19  0.00024       22.5%     55.61
  WD 7:  Seg 28   684-722      7.50  424.29  0.00012       32.5%     46.00
  WD 8:  Seg 31   735-777      5.37  336.43  0.00182       30.0%     47.12

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  414-471    NPEDLIPKLPKPKDLQPFPTTQSLVYRGHSS----LVRSISVSPSGQW-LVSGSDDCTVRFWE
   WD 2  475-513    -ARCL------------------KTVQVG-G----AVKGVAWNPNPSICLVAVSYEDSVLLLN
   WD 3  514-553    PALGD------------------RLLCTATD----QLISSYAEPEEVK-EQPVQWLVSEGEGH
   WD 4  554-592    -EQGH------------------RLVLKHPK----AVRQVTWHAKGDY-LACVLPDSSSSVQV
   WD 5  600-637    -RRTQ------------------NPFRKSKG----LVQCVSFHPVRPY-FFVAT-QRYVRVYN
   WD 6  641-679    -QELT------------------KKLMANCK----WISSMAIHPGGDN-VICGSYDCRLAWFD
   WD 7  684-722    -TKPY------------------KVLRHHKK----ALRSVSFHSHYPL-LASGSDDGSVIVCH
   WD 8  735-777    -IVPV------------------KVLKGHSITHDLGVLDVTFHPTQPW-VFSSGADATIRLYT

   WD40 Template    TGECL------------------RTLSGHTS----GVTSVSFSPDGKR-LVSGSEDGTIKVWD