Input parameters:

  Query = ENSDARP00000110739 (Len=745)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000110739, Len=745):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 GKMAAVQDGPMEVDAEKETKPEILSDGTANPSGNTGGGTLSSSPLTAAPAAGAPKPEDQQTLLAVLQFLKRSKLAESVEI 80  
WD40-rpts                                                                                      

Query       81 LRREAGLAEELEDSHTDAGAGGKDGDAGDTKTLLSRVSIAGAAAPQSTLTPIPAKSGDDQPDVSVVLSAYSQQGDPSLYK 160 
WD40-rpts                                                                                      

Query      161 VYYSDLKKFIESVLDCHRAELSQLFYPLFVHMYLELVYNNHESEAKAFFDKFSGDQECYYEDDLRVLCGLTKKEHMKGNE 240 
WD40-rpts                                                                                      

Query      241 ALLDFRTSRFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEARREVNKVKVFYG 320 
WD40-rpts            (__________________________________WD 1_________________________________) 

Query      321 LLKEPEIEVPLDDEDEEAENEEGKPKKKKTKKDSMGSKSKKQDPNAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLGP 400 
WD40-rpts                                                                                      

Query      401 ETLPSICFYTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEKTSSE 480 
WD40-rpts          (_________________WD 2________________)(_____________WD 3____________)   (__

Query      481 SKILHGHSGPVYGVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGYKGHNYPVWDTQFSPFGYYFVSGGHDRVARLWATD 560 
WD40-rpts      _______________WD 4________________)   (_________________WD 5________________)  

Query      561 HYQPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLL 640 
WD40-rpts       (_________________WD 6________________)   (_________________WD 7_______________

Query      641 WDIGHGLMIAELKGHTGTIYALKFSRDGEIIASGSIDNTVRLWDVMRAIDDVETDDFTAATGHIHLPDNSQELLLGTYHS 720 
WD40-rpts      _)   (_________________WD 8________________)                                    

Query      721 KSTAVIHLHFTRRNLLLAAGSYNSQ 745 
WD40-rpts                               

8 WD40-repeats found in QUERY=ENSDARP00000110739 (Len=745):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   247-319      4.31  292.78  0.00704       15.0%     29.88
  WD 2:  Seg  6   405-443      7.94  442.83  6.7e-05       30.0%     53.62
  WD 3:  Seg 10   444-474      4.37  294.98  0.00657       12.5%     41.84
  WD 4:  Seg 13   478-516     10.04  529.37  4.6e-06       47.5%     54.43
  WD 5:  Seg 17   520-558      8.92  483.12  1.9e-05       35.0%     53.23
  WD 6:  Seg 20   562-600      9.37  501.55  1.1e-05       35.0%     48.41
  WD 7:  Seg 24   604-642     10.75  558.75  1.8e-06       47.5%     55.02
  WD 8:  Seg 28   646-684     10.11  532.43  4.1e-06       40.0%     53.76

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  247-319    TSRFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEARREVNKVKVFY
   WD 2  405-443    -SICFYTFL---------------------------------NAYQGLTAVDFTDDSSLIAGGFADSTVRVWS
   WD 3  444-474    ------------------------------------------VTPKKLRKVKSAADLNLIDKESDDVLERIMD
   WD 4  478-516    -SSESKILH---------------------------------GHSGPVYGVSFSPDRNYLLSSSEDGTIRLWS
   WD 5  520-558    -FTCLVGYK---------------------------------GHNYPVWDTQFSPFGYYFVSGGHDRVARLWA
   WD 6  562-600    -YQPLRIFA---------------------------------GHLADVTCTRFHPNSNYVATGSSDRTVRLWD
   WD 7  604-642    -GNCVRIFT---------------------------------GHKGPIHSLAFSPNGKFLASGSTDGRVLLWD
   WD 8  646-684    -GLMIAELK---------------------------------GHTGTIYALKFSRDGEIIASGSIDNTVRLWD

   WD40 Template    TGECLRTLS---------------------------------GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD