WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000110420 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000110420 (Len=961) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000110420, Len=961): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTVENTTIKSRIKNLLRSPSIKLRRSKAGNNKENLSNKVTLEKVLGITSAGSRALACDPHSGLIAYPAGCVVVLLNPKKN 80
WD40-rpts (_______________WD 1______________)(_________________WD 2________________) (
Query 81 KQHHIINSSRKTITTVSFSPDGKYVVTGESGHMPAVRVWDVAERTQVAELQEHKYGVACVSFSPNSKYIVSVGYQHDMIV 160
WD40-rpts __________________WD 3_________________) (__________________WD 4______________
Query 161 NVWAWKKNVVVAANKVSSKVTAVSFSDDSSYFVTAGNRHVKFWYLDHTKSSKVNATVPLSGRSGLLGELRNNFFSDVACG 240
WD40-rpts ___) (________________WD 5________________) (____________________WD 6__
Query 241 KGRKASSTFCITTSGLLCEFNDKRMLDKWVELRTSMATSLSVCEDLIFCGCADGTVRAFTPTDLHFICTLPHPHSLGTDI 320
WD40-rpts _________________) (_________________WD 7_________________)
Query 321 ATLTEASHLFSYKQNVRYPDAVAVSYDPSSRWLSCVYNDHSLYVWDVRDLRKVGKVYSALYHSSCVWSVEVYPESRDGEQ 400
WD40-rpts (_______________WD 8_______________)(_________________________WD 9____
Query 401 PRLSPGSFLSCSSDNTIRLWHTDAQNTSLSRNVISNDLQKIIYMDSNTSTLLDTDCTISSNSEKVDPQTSENRTGIRTMC 480
WD40-rpts ____________________) (________________WD10________________)(_________________
Query 481 VSPDGLHLASGDRNGTLRIHDLESMEEILDVQAHDSEILCLEYSKPETGLKLLATASRDRLIHILDADKEYSLLQTLDEH 560
WD40-rpts WD11________________) (__________________WD12__________________) (_________
Query 561 SSSITAVRFAANEGKVRMISCGADKSIYFRTAQKTEEGTAFTRTHHIVRKTTLYDMDIDPTRKYAVIGCQDRSIRIFNIG 640
WD40-rpts _________WD13_________________)(_____________________WD14____________________)(_
Query 641 NGKQKKVYKGSQGEDGTVIKVQTDPSGLYVATSCSDKNISIFDFYTGECVATMFGHSEVVTGMKFTNDCRHLITVSGDSC 720
WD40-rpts ___________________WD15___________________) (_________________WD16____________
Query 721 IFVWRLSPELTINMRQRLSDLKQNSRPVQKTPPNKQHTLSARKEIHSAPVIGTMSSDSDKDVEEEEGIEEEDEMFPHLSS 800
WD40-rpts ____) (___________________WD17___________________) (_________________WD18___
Query 801 GSSAGEDTGSSEEKHNSLNSHMKKQSSSSEHESSGSRPRRRWSRRMGSIDLKVKSMLDLRQLESFAMPLFPSKSHDAPKN 880
WD40-rpts ______________) (________________
Query 881 PPAPKNQDLGSTISLQTLAAWMPEENGQTRPHYIQLPPQTPETEVLYPEGCEDQSSLAGRWVSLGTNLHYLKALSTQITF 960
WD40-rpts _WD19________________)
Query 961 E 961
WD40-rpts
 19 WD40-repeats found in QUERY=ENSDARP00000110420 (Len=961): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-37 5.46 340.31 0.00161 12.5% 43.49 WD 2: Seg 4 38-76 6.24 372.28 0.00060 7.5% 49.99 WD 3: Seg 8 80-120 7.84 438.67 7.6e-05 35.0% 57.78 WD 4: Seg 12 124-164 7.89 440.45 7.2e-05 37.5% 55.84 WD 5: Seg 16 167-204 6.58 386.55 0.00038 27.5% 53.66 WD 6: Seg 21 214-258 3.89 275.14 0.01214 15.0% 25.85 WD 7: Seg 25 261-300 8.76 476.64 2.3e-05 15.0% 52.73 WD 8: Seg 31 331-366 6.04 364.14 0.00077 20.0% 47.54 WD 9: Seg 34 367-421 6.43 380.33 0.00047 30.0% 54.91 WD10: Seg 38 425-462 3.49 258.68 0.02015 7.5% 32.20 WD11: Seg 41 463-501 8.82 478.92 2.2e-05 30.0% 47.60 WD12: Seg 44 505-546 7.15 410.02 0.00019 25.0% 56.81 WD13: Seg 48 551-591 7.19 411.61 0.00018 30.0% 53.03 WD14: Seg 52 592-638 6.59 387.05 0.00038 15.0% 56.55 WD15: Seg 56 639-683 7.79 436.37 8.2e-05 22.5% 54.36 WD16: Seg 60 687-725 9.73 516.40 6.8e-06 40.0% 58.76 WD17: Seg 63 729-772 5.25 331.55 0.00212 20.0% 42.36 WD18: Seg 67 776-815 6.12 367.62 0.00069 12.5% 37.89 WD19: Seg 72 864-902 5.84 356.06 0.00099 12.5% 1.22Multiple sequence alignment of 19 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-37 ----------------------V---ENTTIKSRIKNLLR-------SPSI---K----------L--RRSKA--GN--NKENLSN WD 2 38-76 KV-----T-------L-----EK---VLGITSAGSRALAC-------DPHS---G----------L--IAYPA---G--CVVVLLN WD 3 80-120 -N-----K-------Q-----HH---IINSSRKTITTVSF-------SPDG---K----------Y--VVTGE--SGHMPAVRVWD WD 4 124-164 -R-----T-------Q-----VA---ELQEHKYGVACVSF-------SPNS---K----------Y--IVSVGYQHD--MIVNVWA WD 5 167-204 -K-----N-------V-----VV---AANKVSSKVTAVSF-------SDDS---S----------Y--FVTAG---N--RHVKFWY WD 6 214-258 -------N-------A-----TV---PLSGRSGLLGELRNNFFSDVACGKG---R----------K--ASSTF--CI--TTSGLLC WD 7 261-300 ND-----K-------R-----ML---DKWVELRTSMATSL-------SVCE---D----------L--IFCGC--AD--GTVRAFT WD 8 331-366 S---------------------Y---KQNVRYPDAVAVSY-------DPSS---R----------W--LSCVY--ND--HSLYVWD WD 9 367-421 VR-----D-------LRKVGKVY---SALYHSSCVWSVEV-------YPES---RDGEQPRLSPGS--FLSCS--SD--NTIRLWH WD10 425-462 -Q-----N-------T-----SL---SRNVISNDLQKIIY-------MDSN--------------T--STLLD--TD--CTISSNS WD11 463-501 -E-----K-------V-----DP---QTSENRTGIRTMCV-------SPDG---L----------H--LASGD--RN--GTLRIHD WD12 505-546 -M-----E-------E-----IL---DVQAHDSEILCLEY-------SKPETGLK----------L--LATAS--RD--RLIHILD WD13 551-591 -Y-----S-------L-----LQ---TLDEHSSSITAVRF-------AANE---G--------KVR--MISCG--AD--KSIYFRT WD14 592-638 AQ-----KTEEGTAFT-----RT---HHIVRKTTLYDMDI-------DPTR---K----------Y--AVIGC--QD--RSIRIFN WD15 639-683 IGNGKQKK-------V-----YK---GSQGEDGTVIKVQT-------DPSG---L----------Y--VATSC--SD--KNISIFD WD16 687-725 -G-----E-------C-----VA---TMFGHSEVVTGMKF-------TNDC---R----------H--LITVS--GD--SCIFVWR WD17 729-772 -E-----L-------T-----INMRQRLSDLKQNSRPVQK-------TPPN---K----------QHTLSARK--EI--HSAPVIG WD18 776-815 -S-----D-------S-----DK---DVEEEEGIEEEDEM-------FPHL---S----------S--GSSAG--ED-TGSSEEKH WD19 864-902 -S-----F-------A-----MP---LFPSKSHDAPKNPP-------APKN---Q----------D--LGSTI--SL--QTLAAWM WD40 Template TG-----E-------C-----LR---TLSGHTSGVTSVSF-------SPDG---K----------R--LVSGS--ED--GTIKVWD |
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