Input parameters:

  Query = ENSDARP00000110119 (Len=1326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000110119, Len=1326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSAGVPMPIMNWEANNLPESWRKFQQHAELMFSGPLKNKGEDEKCSYLLLWVGEKGRDIYNTWSLSADEAKILKSYYDR 80  
WD40-rpts                                                                                      

Query       81 FTAYVEPKANVIFARYKFHEKMQGEREPFEQFVTDLRLLVKDCNYANSDEMVRDRIVFGIYSPKVREKLLNVGSELTLDR 160 
WD40-rpts                                                                                      

Query      161 AIDVARSHELAQAQLKTISSNMSASREHVHTVFRNASKGSVAKQRNTKYTKKYSDGQQSRNAGSIQSKGCGFCGNKRHPD 240 
WD40-rpts                                                                                      

Query      241 RSLCPARGKVCKICGKLNHFAKVCYSNTEKSIHAISKENSDLAEECDELFIDSVTQHKYSSEMEQAFVNIKIGPKQQEIR 320 
WD40-rpts                                                                                      

Query      321 FKLDTGSSANVIPLYEYVKLDVQHNLQSTSRPLYGYGGERLVVKGKCDLKCKCKDIDMVMAFYVVDTNPPPVIGLKGCID 400 
WD40-rpts                                                                                      

Query      401 FGLIKMVLSVTETKTEVPVKEEFADVFKGIGLFPGECTIHLQPHATPVVHPPRRIPLALRSRLKEELESMEKQGVIIKVT 480 
WD40-rpts                                                                                      

Query      481 EPTEWVNSMVVAEKPRTGQLRVCLDPRDLNKAIKRPHYPLPTLEDITSRLAGAQYFSVLDARSGYWAIKLTDESSRLTTF 560 
WD40-rpts                                                                                      

Query      561 NTVFGRYRFLRLPFGLVSAQDEFQRKIDETYEGLHGVMAIVDDILIHGKTKTEHDRNLRAMLLRSRERGVKLNPEKCIIC 640 
WD40-rpts                                                                                    (_

Query      641 ATEVSYFGHLLTAEGVKPDPAKVAAVRDMEPPKDKGELETVLGMINYLSKFAPGLSDVNAPLRQLLKESSEFVWDTQQDN 720 
WD40-rpts      __________________________________________WD 1__________________________________

Query      721 AFKKIKELLTCEPGPVLAYFDPLKELSLQVDASKYGLGAVMLQDGRPIAYASKSLSESEINYAQIEKELFAILFGCKRFH 800 
WD40-rpts      ________)                                                                       

Query      801 QYIYGRQVIVESDHKPLESIMRKPMASVPPRLQRMILQLQKYNFTIVHKPGKSIPVADTLSRKSLDDHDTGLSEGMDIQV 880 
WD40-rpts                                                                                      

Query      881 HTVFSSLPVSDSRLEEIKDHTGKDLQFETLKQVIQRGWPEEKRKCPQSISEFWNHRDELTSMNGIIFKGEKIVVPTSLRS 960 
WD40-rpts                                                                                      

Query      961 DMLSRIHASHLGIEKSKQRARDIMFWPGMGKEIENMISTCTICLTYRPSNTKEPMISHRIPDRPWQIVATDLFTWNNEDY 1040
WD40-rpts                                                                                      

Query     1041 LVTVDYYSRYFELDKLQTTTSASVISKLKAAFARHGIPEAVISDNGPQYSSSEFETFARTWQFKHTTTSPYYPQSNGLAE 1120
WD40-rpts                                                                                      

Query     1121 KSVHTAKMLLEKAKAGKGDPFLSMLEYRNSPVDGFKSPAQLLMSRRLRSTLPTTNQQLVPKLVSIKDVKTKRVQKQQHQK 1200
WD40-rpts                                                                                      

Query     1201 NYYDRSSRPLSQLKEGQTVRVQEQGYWKPAVVIKTANTERSYHVRTVDGREYRRNRRHLLDTKESQNNSLEESELHDGAE 1280
WD40-rpts                                                                                      

Query     1281 TCATPTDSSLHSDSTHTPKHTDELPEATIYRTRSGRQIKPRVILDL 1326
WD40-rpts                                                    

1 WD40-repeats found in QUERY=ENSDARP00000110119 (Len=1326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   639-729      2.84  232.12  0.04537       22.5%     -3.51

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  639-729    ICATEVSYFGHLLTAEGVKPDPAKVAAVRDMEPPKDKGELETVLGMINYLSKFAPGLSDVNAPLRQLLKESSEFVWDTQQDNAFKKIKELL

   WD40 Template    TGECLRTLSGHTSGVTSVSFS------------PDG---------------KRLVSGS----------EDGTIKVWD--------------