Input parameters:

  Query = ENSDARP00000109722 (Len=876)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000109722, Len=876):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGYKPDILWSPHHADRYVICDTELSLYRIGPSGSSETKAGALQLSEETAATLLAINSDTPFMKCVAWYPKHEPECLLA 80  
WD40-rpts                                                                                      

Query       81 VGHTNGRVVLTSLGQSHNSKSKDLAGKEFVPKHARQCNTLAWNPVDSNWLAAGLDKHRADFSVLIWDISSKFSPEAVPAE 160 
WD40-rpts                  (_________________________WD 1________________________)             

Query      161 KVRLSGDADSGLLVTKPLYELGQNDACLSLCWLPRDHQKLLLAGMHRNLAIFDLRNTSQKTFVNTKAIQGVTVDPHFQDR 240 
WD40-rpts                                                           (_________________WD 2_____

Query      241 VASYFEGQVAIWDLRKFEKPVFTLNEQPKPLTKVAWCPTRMGLLATLTRDSNIIRLYDMQHTPMPFGDEVEPTIMERGVQ 320 
WD40-rpts      ____________)    (__________________WD 3_________________)                      

Query      321 PCSESIISSFAWHPSAQNRMVVVSPSRVMNDFTLFERISLAWSSTTSLMWACGRHLYECAEDSGQAAEAEKDIATKMRER 400 
WD40-rpts                                                                                      

Query      401 AQSRYGHDTVQVWRNHVLAGGDDPQLRSLWYTLHFMKQYTENVEQKQQSNKQSLIYSGIKNIVKSSSGTTETRRCWSGSD 480 
WD40-rpts                                                                                      

Query      481 RQTDVPRFHSEERSLALQLCGWISQGPDTDVEPFLKSLEQEGEWERAAAVALFNLDIRRAIQILNKGASSEKGDLNLNVV 560 
WD40-rpts                                                                                      

Query      561 AMALSGYTDEKNSLWREMCSSLRLQLKKPYLCIMFAFLTSEPGAYDGVLYESRVAVRDRVAFACMFLNDAQLPRYIDKLT 640 
WD40-rpts                                                                                      

Query      641 NEMKEAGNLEGILLTGLTKDGVDLMESYVDRTGDVQTASFCMLKGSPGEVLKDPRVQCWIENYRNLLDAWRFWHKRAEFD 720 
WD40-rpts                                                                                      

Query      721 IHRSKLDPSSKPLAQVFVSCNFCGKSISYSCSAMPHQGRGFSQYGVSGSPTKSKVTSCPGCRKPLPRCALCLMNMGTPVS 800 
WD40-rpts                                                                                      

Query      801 SCPGTGKADEKADLTRDKKLAQFNNWFTWCHNCRHGGHAGHMLSWFRDHSECPVSACTCKCMQLDTTGNLVPSDSV 876 
WD40-rpts                                                                                  

3 WD40-repeats found in QUERY=ENSDARP00000109722 (Len=876):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    93-147      3.30  250.85  0.02562       22.5%     30.35
  WD 2:  Seg 13   214-253      5.69  349.70  0.00121       17.5%     44.10
  WD 3:  Seg 17   258-298      3.05  240.57  0.03509       22.5%     44.99

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   93-147    LGQSHNSKSKDLAGKEFVPKHARQCNTLAWNPVDSNWLAAGLDKHRADF-SVLIWD
   WD 2  214-253    LRNTSQK----------TFVNTKAIQGVTVDP-HFQDRVAS----YFEG-QVAIWD
   WD 3  258-298    -EKPVFT----------LNEQPKPLTKVAWCPTRMGLLATL----TRDSNIIRLYD

   WD40 Template    TGECLRT----------LSGHTSGVTSVSFSP-DGKRLVSG----SEDG-TIKVWD