Input parameters:

  Query = ENSDARP00000109543 (Len=1190)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000109543, Len=1190):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPAGQSDVRAKTKARFDEVLKRYTNPPSEKKKAKQISDQSQEIIVLQTLKKNLDLSKDTEDDEAILHNTYDPAQGSPRYT 80  
WD40-rpts                                                                                      

Query       81 KNRRREREVSEKTNLNNAVSEEESTLTSGKRKSKRKLPQPPPSVQDADDNDRRTDAETDGKPIRRIKKGKNKAANDSSQQ 160 
WD40-rpts                                                                                      

Query      161 KEQTETEDDYLRAYQHQISQEEETAGKKSTRKKAAEKLEEKQLLNNELEKKKKKAKSSKHDAERSQAEVSAENQTEIIQD 240 
WD40-rpts                                                                                      

Query      241 DVEEFKEDTVKPKVKKKKKRKEVPVEEEQTEEKPAFDDSLVLGVYIHRTDKLKTDLMVSHPMVKVHVVDEVTGQYVKKED 320 
WD40-rpts                                                                                      

Query      321 SHRHVSSFYEQENIEHILPIITQPFDFKKHKTTVPEWEEQIIFNERFGYFLQDDDESPRVMLLFEILDFISMEEARTNVS 400 
WD40-rpts                                                                                      

Query      401 VDRHERGFRKIAWAFLKLVGTNGVLNIDTKLRLQLYCPPPRAKKVPQTVEVFQWWSKYPRNKYTSTLYVTVKGLKPPEHV 480 
WD40-rpts                                                                                      

Query      481 DPGIRSMMALQQERGSTSYSELNSEMTNKTSTQIQESKAETMKWSRMPGQVCRIPNKPMHSFRGGQMGCFTLCFSHDGRA 560 
WD40-rpts                   (______________WD 1_____________)         (__________________WD 2__

Query      561 LAAACADRDAFPIIIYEIPSGKVLSSFNGHLSVVYDLCWSRDDKGLLTASSDGTVRVWNVERLQTLAHKTLPHPSFVYCA 640 
WD40-rpts      ________________)   (_________________WD 3________________)     (_______________

Query      641 KFHPQAQSLVATGGYDGVLRVWNVDVQDVNGQLLQEFDGHKTFINTLCFDPEGSRMFSADNSGLIIVWGTKVMPGSRRGA 720 
WD40-rpts      __WD 4________________)       (_________________WD 5________________)           

Query      721 TSQWSIEREIKEADLNGISINSLEVHPNGRRLLIHAKDSVLRVMDLRILAVKKYIGATNYRDRINSTFTPCGSFIFAGSE 800 
WD40-rpts            (_________________WD 6________________)  (__________________WD 7__________

Query      801 DGLAYVWNSETGDQVAVYSELCYSSALRAVAFHPHENMVAFCCFGQNQPIHLYLYDRKVAQMEVESLRGWSRSENLDSKT 880 
WD40-rpts      _______)   (___________________WD 8__________________)               (__________

Query      881 GRISSEFMSIQNPTATSMDRFANTARMSLKMQRVKQKLDSVLEPHRSSSNVDMYEQGGMSSLGRSIEGLNSYLPPPSLLS 960 
WD40-rpts      _______WD 9________________)            (___________________________WD10________

Query      961 PHSKLQMSSSLSAQLIPQATLTSHTSGYSQAGQPIRRAPSLRQQKSFHDYEFSQQVETDLGQAHQTVVSLYEYRANRSDE 1040
WD40-rpts      __________________)     (_____________________WD11_____________________)  (_____

Query     1041 LSMRRGDVVHVLYKDNDSWWFGRLVSGQEGYFPASYVADEGNFDEELSRALEAQPSLIDQPEEAEHATPVQMSAAISASG 1120
WD40-rpts      ____________WD12________________)                                               

Query     1121 ELKIISELDTDAEASSTTRKKKKKKVKRIEVPSEDLPPSSGSSRRRRPLPKLGQANGAFEGEGLNLRDLV 1190
WD40-rpts                                                                            

12 WD40-repeats found in QUERY=ENSDARP00000109543 (Len=1190):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   494-526      3.29  250.45  0.02594       10.0%     26.16
  WD 2:  Seg 13   536-577      6.11  367.25  0.00070       22.5%     52.20
  WD 3:  Seg 17   581-619      9.91  524.22  5.3e-06       40.0%     53.87
  WD 4:  Seg 21   625-663      7.37  419.01  0.00014       30.0%     45.88
  WD 5:  Seg 24   671-709      9.33  500.06  1.1e-05       32.5%     53.96
  WD 6:  Seg 28   727-765      7.45  422.48  0.00013       20.0%     53.92
  WD 7:  Seg 32   768-808      6.84  397.05  0.00028       30.0%     49.99
  WD 8:  Seg 36   812-854      5.17  328.28  0.00234       17.5%     56.12
  WD 9:  Seg 41   870-908      6.66  389.77  0.00035       12.5%     45.32
  WD10:  Seg 46   921-979      3.98  278.86  0.01082       20.0%     16.61
  WD11:  Seg 48   985-1032     6.18  370.08  0.00064        7.5%     23.70
  WD12:  Seg 51  1035-1073     3.74  268.98  0.01467       12.5%     29.12

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  494-526    RG-----------------S-------------------TSYSELNSE--MTNKTSTQ-IQES--KAE---TMKWSR
   WD 2  536-577    -NKP--------MHSFR--G-------------------GQMGCFTLC--FSHDGRAL-AAAC--ADRDAFPIIIYE
   WD 3  581-619    -GKV--------LSSFN--G-------------------HLSVVYDLC--WSRDDKGL-LTAS--SDG---TVRVWN
   WD 4  625-663    T--L--------AHKTL--P-------------------HPSFVYCAK--FHPQAQSLVATGG--YDG---VLRVWN
   WD 5  671-709    -GQL--------LQEFD--G-------------------HKTFINTLC--FDPEGSRM-FSAD--NSG---LIIVWG
   WD 6  727-765    -ERE--------IKEAD--L-------------------NGISINSLE--VHPNGRRL-LIHA--KDS---VLRVMD
   WD 7  768-808    -ILA--------VKKYI--G-------------------ATNYRDRINSTFTPCGSFI-FAGS--EDG---LAYVWN
   WD 8  812-854    -GDQ--------VAVYSELC-------------------YSSALRAVA--FHPHENMV-AFCCFGQNQ---PIHLYL
   WD 9  870-908    -WSR--------SENLD--S-------------------KTGRISSEF--MSIQNPTA-TSMD--RFA---NTARMS
   WD10  921-979    VLEP--------HRSSS--NVDMYEQGGMSSLGRSIEGLNSYLPPPSL--LSPHSKLQ-MSSS--LSA---QLIPQA
   WD11  985-1032   TSGYSQAGQPIRRAPSL--R-------------------QQKSFHDYE--FSQQVETD-LGQA--HQT---VVSLYE
   WD12 1035-1073   -ANR--------SDELS--M-------------------RRGDVVHVL--YKDNDSWW-FGRL--VSG---QEGYFP

   WD40 Template    TGEC--------LRTLS--G-------------------HTSGVTSVS--FSPDGKRL-VSGS--EDG---TIKVWD