Input parameters:

  Query = ENSDARP00000109495 (Len=1289)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000109495, Len=1289):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 SARRRSSRLRCPKQQIKNGKQNSNNAFTCNPATMCFIKRYASSTSDCGSVSKNPALDQKYWEDITAICRQTPYCLYLYHG 80  
WD40-rpts                                                                                      

Query       81 VEIENDKKASVLLLGFFDEDTGKNKIRLLDVVYPTKESTEDICNYILDLLRKIGIPISNMAILYSDFPDHEHLVAGLQLM 160 
WD40-rpts                                                                                      

Query      161 KAEIVSLCGLTDLTGQVCHSGVEKIEFSDLILNLIIEIYKHFPSFPADLQALLEDVEGSDIDNLTSQCSLFWRIIKKISL 240 
WD40-rpts                                                                                      

Query      241 AWSHLEKYFGSLDTEEEAVCLLLEDPKIKLNVLFLTHALQPLCDFQEIIDQGASVLQLLQDASKLLRLYTQSFLRPKAAE 320 
WD40-rpts                                                                                      

Query      321 YFHRRGKTSLVQETVGHLPRGEVAVGEQAADFLQQHSEELSDYLETFHRSIISFYTTVTVNIVKRLPLPDSTLRNLSLVL 400 
WD40-rpts                                                                                      

Query      401 SPGKKLEVTGKMVQDLGIGFGVCSENVSLLKDEFLEYQFIDESDAQPADQSMKQYWKTELRIMGKASSFGKVILSLLALP 480 
WD40-rpts              (____________________________________________________WD 1_______________

Query      481 TTLKKEQNFERLFQHTDNIKRKKLKDCKKHVSEDDVTDSSSYKSAPSHLSPEMLDVIDLGEEEDVEPMEVEDTLPVSDLD 560 
WD40-rpts      _____________________________________)                                          

Query      561 TESQNDTKGNCPNVSSKCSSSHDDYSSSDDDGDVIWREKGKRNSCHNNEQTKNPYKGSYIVGEMVWGPLEGFGLWPGLVQ 640 
WD40-rpts                                                                                      

Query      641 SWDSRKPCGSMRKVFFFGNSMQSEIQADDLTPFFSFAKCFSSNSFATVATYKDAIFNSLQVASRRSRMFFSPDTDSMDEL 720 
WD40-rpts                                                                                      

Query      721 LRVMLNWAFGGFKPSGEDGLRPQSECNELVFTPRSVNGNDGPSSNFKDHREKLFNLTVSLNKLPESLDLHRGSIDIGKTH 800 
WD40-rpts                                                                                      

Query      801 VYRKFMLPKRSLRPLQSREKKYTHWKRYLNDMESMKVDSRQNSQERYEMVHAFLENKMDIEEFCLSCGSTFVDIIHPLFE 880 
WD40-rpts                                                                                      

Query      881 GSLCVKCKFNFTETLYRYDEDGYQSYCTVCCSGMEVILCGHDSCCRCYCVDCLDILVGKGTFKQLKNVDPWTCYLCAPET 960 
WD40-rpts                                                                                      

Query      961 SSGALKPRHDWSIRVQELFANNSAMQFEPHRVYPSIPADQRRPVRVLSLFDGIATGYLVLRDLGFKVEKYVASEVDEESV 1040
WD40-rpts                                                                                      

Query     1041 TISMVNHEGKITYVDDVKKITRKHIDKWGPFDLLIGGSPCNDLCTVNPGRKGLFEGSGRLFFEYYRLLNVLKPKEDDPRP 1120
WD40-rpts                                                                                      

Query     1121 FFWLFENVVLMENRVRADISRFLECNPVLIDAVKVSPAHRARYFWGNIPGMNSRPIIASQKDKVSLQDCLDGGRTAKYEK 1200
WD40-rpts                                                                                      

Query     1201 IRTITTRPNILRPGIDDRHYPIVMNGKDDSLWITEIEKIFGFPKHYTDVKNLGRMQRQRVLGKSWSVPVIRHLLAPLKDY 1280
WD40-rpts                                                                                      

Query     1281 FACDEFPAK 1289
WD40-rpts               

1 WD40-repeats found in QUERY=ENSDARP00000109495 (Len=1289):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   409-518      2.86  232.75  0.04452       27.5%     -11.54

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  409-518    TGKMVQDL-GIGFGVCSENVSLLKDEFLEYQFIDESDAQPADQSMKQYWKTELRIMGKASSFGKVILSLLALPTTLKKEQNFERLFQHTDNIKRKKLKDCKKHVSEDDVTD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD---------GKRLVSGSED-----------------GT----------IK-----------------------------------VWD