Accession: ENSDARP00000108946 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000108946 (Len=265)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000108946, Len=265):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 TQDVQKHSVHTLVFRSLKRTHDMFVADHAKPIAQDEQSFKVKMAAKMRAEYKAVLHMPVLKEGREKGSLHTSDPYGQSAY 80  
WD40-rpts                                                                        (_____________

Query       81 PLPDTTPEYLVTGTHPYPSAPGVALTADTQMLKMPSEMGVHSMALALPPSQARQEASRTAASVAEIHRHAGGAERSHPPQ 160 
WD40-rpts      ____WD 1________________)   (_________________WD 2_________________)____________

Query      161 HALSLMEGGTRTLVPRKAPTMPKPQWHPPWKLYRVISGHLGWVRSIAVEPGNQWFVTGSADRTIKIWDLASGKLKVSNWA 240 
WD40-rpts      ____WD 3_________________)   (_________________WD 4________________)            

Query      241 HQHSERGGRQQPQPVPLLLWRGQTG 265 
WD40-rpts

4 WD40-repeats found in QUERY=ENSDARP00000108946 (Len=265):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    67-105      4.30  292.46  0.00711       10.0%     -10.55
  WD 2:  Seg  2   109-148      4.66  307.08  0.00452       10.0%     27.92
  WD 3:  Seg  5   147-186      6.61  387.69  0.00037       10.0%     23.33
  WD 4:  Seg  7   190-228      9.62  512.05  7.8e-06       40.0%     55.05

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   67-105    -GSLHTSDPYGQSAYPLPDTTP-EYLVTGTHPYPSAPGVAL
   WD 2  109-148    -TQMLKMPSEMGVHSMALALPPSQARQEASRTAASVAEIHR
   WD 3  147-186    HRHAGGAERSHPPQHALSLMEG-GTRTLVPRKAPTMPKPQW
   WD 4  190-228    -WKLYRVISGHLGWVRSIAVEP-GNQWFVTGSADRTIKIWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD