Input parameters:

  Query = ENSDARP00000108708 (Len=1677)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000108708, Len=1677):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNSESQYRIQGTRSNSFIIPDREKPCSFSVHSSKEDVLSPLGFWNAGSRFSRLKSGNEGETSSTSKSSRAFISRQYDFI 80  
WD40-rpts                                                                                      

Query       81 TQKLKSGSQWDEVPEDLLPGGCLMLPSEKDCLYRNHKERRKTCNKYALNAMKTPERSLRLEDIEDQSSPRVVIKKDGSVR 160 
WD40-rpts                                                                                      

Query      161 VEFNNSPNSALILNNCTEPVQLLKFSPTMESTCGLSAAGPSLDSHNGAAQAMSSLKSSKGSSLSSDGSLYDLPWRTSVEL 240 
WD40-rpts                                                                                      

Query      241 NDSDNASPDQQRQTVSTNTGFFDEQLPAITTTDLYRDPRIASTFPTVKDLQCSNGSRSHHRSSFVSVMEGLSSEGVPEEQ 320 
WD40-rpts                                                                                      

Query      321 QYSSFTLPCRKSKASPENNGKKASIRSRFRRISDWTGSLTRKKKFQEPRYNEPVDCFDSGVDGLTADTSSPSQVSSLMAT 400 
WD40-rpts                                                                                      

Query      401 SNGMSQSCSLSRSLHSRSGSAGALNLGNDILRQNIYKNFMMELKTARLPAERGAEDWCESSSEETGSSSQEIPGSLEQLD 480 
WD40-rpts                                                                                      

Query      481 LLFEKEQGVVRRAGWLSFKPLLTVHKDRKLELVSRRKWKQFWVTLKGCTLLFYETYGKASSEPESPCYALFAEDGVVQAV 560 
WD40-rpts                                                                              (_______

Query      561 PEHPKKENIFCLSNTYGDVYLFQASSQTDLENWVTAIHSASASLFAKRYGKEDTLRLLRGQIRGLLQKIDMDGKMKKMAE 640 
WD40-rpts      ______________________________________WD 1______________________________________

Query      641 LQLSVVGDPKNRKAIENQIQQWEQNLERFNMDLFRMRCYLASLQGGELPNPKSLLATASRRTKAALARLGIFSVSSFHAL 720 
WD40-rpts      _______)                                                                        

Query      721 ICSRDEATMRKRSLSLSHRGRSKKGVFSSLKGLDTLTKRGHEKKHSLSQRLGSLTNVYSIVPPEGSQWDCSRESTTCIYM 800 
WD40-rpts                                                                                      

Query      801 PNCQTVTVLLKSHHTVMDVLAETCMLVGLDPSTHCLRLRRFTGDKMEISTPSAHELLQGLPYDELEVSQLQVYTLHMSRP 880 
WD40-rpts                                                                                      

Query      881 SLTGDFGFAVTGYVDSLKNSHIIVSEVLPDGLAFSKGLRPGDEIVVLNGCEVSSLDLTLIQTLFNEQNLQLTAKRHLPSI 960 
WD40-rpts                                                                                      

Query      961 PHDSDTANVQSPYRDIHQNRQRAKLPPVEQKDLLEIENISSYLKSTTNDTANLSNYTITKKKTQTVIVADVISMQEMMKR 1040
WD40-rpts                                                                                      

Query     1041 TFRLSVDTVCSLYHSYQEGSGGLMESQEEQTGPEPAILRPCPRHMSATERLRKVIQELVDTEKSYVKDLNCLFEIYLKPL 1120
WD40-rpts                                                                                      

Query     1121 QKETFLTQDEMESLFGSLPEMLDFQKVFLQTLEEKISSSPNFNTFETPVQFKKLLFSLGGSFLYYAEHFKLYSGFCANHI 1200
WD40-rpts                                                                                      

Query     1201 KVQKVLERAKTDRSFKEFLDARNPTKQHSTTLESYLIKPVQRVLKYPLLLRELVSLTDTDSEEHYHLTEALKEMEKVASH 1280
WD40-rpts                                                                                      

Query     1281 INEMQKIYEDYGAVFDQLVAEQSGTEKEVTEISMGQFLMHSSVIWLNPFPSLGRMKKDPELTVFVFKRAVILLYRENNKV 1360
WD40-rpts                                                                                      

Query     1361 RKKMPVTSRSAHGDQDSFKFRWLIPLSALQVRLGNTADTDCLWELIHTKSQKEGRPETVFQLCSSTPECKVNIIKVMRSI 1440
WD40-rpts                                                                                      

Query     1441 LRENLRRNMQRVEQSERTCKKRLTPLRKSLPASARIGSSRAFWLAKQPSNDSPVPSNDPLRLSLADSDSASASSGTTSSA 1520
WD40-rpts                                                                                      

Query     1521 SAPLDPPSQQQSGLRESSIISDEDEDGSEPADWTDAPNAIEVQFRKLGLTEETSQAAAPRVQPESGEVDTPERKASLKRA 1600
WD40-rpts                                                                                      

Query     1601 HFAVVKRKPARDTNSLRRSQVALLNMRRHSHSLDIPAEIAAHSVDLNSLLEKDFSVQSLTSVVNEDFFYDNPMEPKN 1677
WD40-rpts                                                                                   

1 WD40-repeats found in QUERY=ENSDARP00000108708 (Len=1677):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   553-648      2.82  231.27  0.04656       17.5%     22.28

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  553-648    EDGVVQAVPEHPKKENIFCLSNTYGDVYLFQASSQTDLENWVTAIHSASASLFAKRYGKEDTLRLLRGQIRGLLQKIDMDGKMKKMAELQLSVVGD

   WD40 Template    TGECLRTLSGH--TSGVTSVSFSPDGKRLVSGSE----------------------DGTI--------------------------------KVWD