Input parameters:

  Query = ENSDARP00000107355 (Len=1225)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000107355, Len=1225):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNY 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDISGLRKKNLSPGAVDTEVRGISGVDLFGASDAVVKHVLEQGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKA 240 
WD40-rpts      __)                                (_________________WD 5________________)(_____

Query      241 WELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAHPNLNLFAAGHDSGMLVFKL 320 
WD40-rpts      ______________WD 6___________________)(__________________WD 7_________________) 

Query      321 ERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSGSKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRE 400 
WD40-rpts                                        (________________WD 8_______________)         

Query      401 SDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDAEGVTLFDVQQ 480 
WD40-rpts                                                                                      

Query      481 KRSLATVKIAKVKYVVWSSDANHVALLAKHAIMICNKKLESLCNIHENIRVKSGAWAENEVFIYTTSNHIKYALTSGDHG 560 
WD40-rpts                                                                                      

Query      561 IIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFKLALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVAL 640 
WD40-rpts                                                                                      

Query      641 HFVKDEKTRFSLALECGNIEVALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLTKLRKM 720 
WD40-rpts                                                                                      

Query      721 MKIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDLEKEMVPEVDPNAQLLQPPP 800 
WD40-rpts                                                                                      

Query      801 PINPLDTNWPLLTVSKGFFEGAIAAKGRAGQMVADLDMDAPGGEGWGEDAELHLDEDGFMDAQEGLGDEGAIGKDDGGGW 880 
WD40-rpts                                                                                      

Query      881 DVEEDLDLPPELDVPSVGGGGAEGEGFFVPPTKGTSPTQMWCNNSQLSVDHILAGSFETAMRLLHDQVGVVQFGPYKQLF 960 
WD40-rpts                                                                                      

Query      961 MQTLSRGRTCYLGLPSLPCLHSFPLRNWKDSGPKGGLPAVGLRLADLISRLQQCYQLTTSGRFEDAVERFRAILLSVPLL 1040
WD40-rpts                                                                                      

Query     1041 VVDNKQEIAEAQQLITICKEYIIGLTMETERKKLPKDSLDEQKRICEMAAYFTHCSLQPVHMVLVLRTALNLFFKLRNFK 1120
WD40-rpts                                                                                      

Query     1121 TAAGFARRLLELGPKPEVAQQTRKILSACEKSLTDAHQLNYDPHNPFDICAASYTPLYRGRPVEKCPLSGACYCPKYKGE 1200
WD40-rpts                                                                                      

Query     1201 VCRVTQVTEIGKDVIGLRVSPLQFR 1225
WD40-rpts                               

8 WD40-repeats found in QUERY=ENSDARP00000107355 (Len=1225):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.00  321.11  0.00293       22.5%     46.92
  WD 2:  Seg  4    41-79       7.12  408.76  0.00019       27.5%     56.89
  WD 3:  Seg  8    83-121      8.26  455.78  4.5e-05       32.5%     56.80
  WD 4:  Seg 12   125-163      8.78  477.33  2.3e-05       37.5%     56.82
  WD 5:  Seg 19   196-234      7.93  442.11  6.8e-05       30.0%     49.70
  WD 6:  Seg 23   235-278      8.49  465.38  3.3e-05       40.0%     50.67
  WD 7:  Seg 27   279-319      2.97  237.43  0.03860       12.5%     57.01
  WD 8:  Seg 34   355-391      2.97  237.17  0.03892       15.0%     33.62

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     -----M----LTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWD
   WD 2   41-79     -CT--L----IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWN
   WD 3   83-121    -RR--C----LFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN
   WD 4  125-163    -RT--C----VCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWD
   WD 5  196-234    VVK--H----V-LEQGHDRGVNWAAFHPSMPLIVSGADDRQVKIWR
   WD 6  235-278    MNE--SKAWELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWD
   WD 7  279-319    MSKRTG----VQTFRRDHDRFWVLGAHPNLNLFAAGH-DSGMLVFK
   WD 8  355-391    -----V----MQLRSGSKFPVFSMSYNPAENAVLLCTRATNLENST

   WD40 Template    TGE--C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD