Input parameters:

  Query = ENSDARP00000107302 (Len=519)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000107302, Len=519):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 LSQRRVGNTQDVQKHSVHTLVFRSLKRTHDMFVADHAKPIAQDEQSFKVKMAAKMRAEYKAVLHMPVLKEGREKGSLHTS 80  
WD40-rpts                                      (_________________WD 1________________)   (_____

Query       81 DPYGQSAYPLPDTTPEYLVTGTHPYPSAPGVALTADTQMLKMPSEMGVHSMALALPPSQARQEASRTAASVAEIHRHAGG 160 
WD40-rpts      ____________WD 2________________)   (_________________WD 3________________)(____

Query      161 AERSHPPQHALSLMEGGTRTLVPRKAPTMPKPQWHPPWKLYRVISGHLGWVRSIAVEPGNQWFVTGSADRTIKIWDLASG 240 
WD40-rpts      _________WD 4____________)           (_________________WD 5________________)   (

Query      241 KLKLSLTGHISTVRGVAVSNRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYDLDLHPTIDVLVTCSRDATARVWD 320 
WD40-rpts      _________________WD 6________________)   (_________________WD 7________________)

Query      321 IRTKANVHTLSGHTNTVATVKCQSAEPQVVTVGSHDTTIRLWDLVAGKTRATLTNHKKSVRALVLHPRQYTFASGSPDNI 400 
WD40-rpts         (_________________WD 8_________________)   (________________WD 9_____________

Query      401 KQWKFPDGNFIQNLSGHNAIINTLAVNSDGVLVSGADNGTIHMWDWRTGYNFQRIHAAVQPGSLDSESGIFSCVFDQSES 480 
WD40-rpts      ___)   (________________WD10________________)           (_________________WD11__

Query      481 RLITAEADKTIKVYKEDDTATEESHPVNWKPEILKRKQF 519 
WD40-rpts      ______________)                        

11 WD40-repeats found in QUERY=ENSDARP00000107302 (Len=519):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    33-71       5.85  356.27  0.00098        2.5%     29.89
  WD 2:  Seg  6    75-113      4.89  316.78  0.00335       10.0%     11.36
  WD 3:  Seg 10   117-155      4.64  306.13  0.00465       10.0%     38.87
  WD 4:  Seg 14   156-186      2.81  230.82  0.04719       10.0%      9.83
  WD 5:  Seg 17   198-236      9.61  511.70  7.9e-06       40.0%     55.29
  WD 6:  Seg 21   240-278      9.64  512.82  7.6e-06       37.5%     56.32
  WD 7:  Seg 25   282-320      9.60  511.07  8.0e-06       35.0%     55.91
  WD 8:  Seg 29   324-363      8.72  475.04  2.5e-05       40.0%     51.90
  WD 9:  Seg 33   367-404      7.99  444.90  6.3e-05       32.5%     50.75
  WD10:  Seg 37   408-445      8.81  478.68  2.2e-05       40.0%     52.42
  WD11:  Seg 42   457-495      8.12  450.02  5.4e-05       27.5%     38.62

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-71     VADHAKPIAQDEQSFKVKM-AAKMRAEYKAVLHMPVLKEG
   WD 2   75-113    GSLHTSDPYGQSAYPLPDT-TPEYLVTGTHPYPSAPGVAL
   WD 3  117-155    TQMLKMPSEMGVHSMALAL-PPSQARQEASRTAASVAEIH
   WD 4  156-186    --------RHAGGAERSHP-PQHALSLMEGGTRTLVPRKA
   WD 5  198-236    WKLYRVISGHLGWVRSIAV-EPGNQWFVTGSADRTIKIWD
   WD 6  240-278    GKLKLSLTGHISTVRGVAV-SNRSPYLFSCGEDKQVKCWD
   WD 7  282-320    NKVIRHYHGHLSAVYDLDL-HPTIDVLVTCSRDATARVWD
   WD 8  324-363    KANVHTLSGHTNTVATVKCQSAEPQVVTVGSHDTTIRLWD
   WD 9  367-404    GKTRATLTNHKKSVRALVL-HPRQYTFASGSPD-NIKQWK
   WD10  408-445    GNFIQNLSGHNAIINTLAV-NSDGV-LVSGADNGTIHMWD
   WD11  457-495    AAVQPGSLDSESGIFSCVF-DQSESRLITAEADKTIKVYK

   WD40 Template    GECLRTLSGHTSGVTSVSF-SPDGKRLVSGSEDGTIKVWD