Input parameters:
Query = ENSDARP00000107299 (Len=116)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000107299, Len=116):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAESNESQTAMNMGPTSRDEPPSTEEMEQRQRKASTSSSEDGEHEDNDRRRVVGSPGSRDGSPRVGSPVARASPRAKRD 80
WD40-rpts (_______________________________WD 1_______________________________)
Query 81 QKSSDSDSDSSDSDDGVMRKIRSSVMHIRRTSDEET 116
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000107299 (Len=116):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-68 3.04 240.06 0.03564 30.0% -15.12
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-68 MAAESNESQTAMNMGPTSRDEPPSTEEMEQRQRKASTSSSEDGEHEDNDRRRVVGSPGSRDGSPRVGS
WD40 Template TGECLR--------TLSGHTSGVT-----------SVSFSPDG-------KRLVS--GSEDGTIKVWD